Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics

Genome-Resolved Metagenomics Is Essential for Unlocking the Microbial Black Box of the Soil

(2021) Leandro Nascimento Lemos et al.   TRENDS IN MICROBIOLOGY

Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane

(2021) Luke J. McKay et al.   ISME Journal

Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment

(2019) Boryoung Shin et al.   Scientific Reports

Probing the active fraction of soil microbiomes using BONCAT-FACS

(2019) Estelle Couradeau et al.   Nature Communications

Carbon mass balance, isotopic tracers of biogenic methane, and the role of acetate in coal beds: Powder River Basin (USA)

(2019) David S. Vinson et al.   CHEMICAL GEOLOGY

Changes in microbial communities and associated water and gas geochemistry across a sulfate gradient in coal beds: Powder River Basin, USA

(2018) Hannah Schweitzer et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Long-term succession in a coal seam microbiome during in situ biostimulation of coalbed-methane generation

(2018) Sabrina Beckmann et al.   ISME Journal

Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community

(2017) Lily Momper et al.   ISME Journal

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles

(2017) Ramunas Stepanauskas et al.   Nature Communications

Occurrence and expression of novel methyl-coenzyme M reductase gene (mcrA) variants in hot spring sediments

(2017) Luke J. McKay et al.   Scientific Reports

Functional Metagenomics of a Biostimulated Petroleum-Contaminated Soil Reveals an Extraordinary Diversity of Extradiol Dioxygenases

(2016) Laura Terrón-González et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of Biosurfactant Produced by Bacillus licheniformis TT42 Having Potential for Enhanced Oil Recovery

(2016) Harish Suthar et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Synthesis and Characterization of Anaerobic Degradation Biomarkers of n-Alkanes via Hydroxylation/Carboxylation Pathways

(2016) Jing Zhou et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Hydrogeochemistry and coal-associated bacterial populations from a methanogenic coal bed

(2016) Elliott P. Barnhart et al.   INTERNATIONAL JOURNAL OF COAL GEOLOGY

The effect of coal rank on biogenic methane potential and microbial composition

(2016) Steven J. Robbins et al.   INTERNATIONAL JOURNAL OF COAL GEOLOGY

Metabolism of Hydrocarbons in n-Alkane-Utilizing Anaerobic Bacteria

(2016) Heinz Wilkes et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia

(2016) Roland Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challenges

(2015) Daniel Ritter et al.   INTERNATIONAL JOURNAL OF COAL GEOLOGY

Potential Role of Acetyl-CoA Synthetase (acs) and Malate Dehydrogenase (mae) in the Evolution of the Acetate Switch in Bacteria and Archaea

(2015) Elliott P. Barnhart et al.   Scientific Reports

Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation

(2015) Bo Liang et al.   AMB Express

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

(2014) Guillaume Borrel et al.   BMC GENOMICS

Combined effects of DOM and biosurfactant enhanced biodegradation of polycylic armotic hydrocarbons (PAHs) in soil–water systems

(2014) Hui Yu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Fast bioremediation of petroleum-contaminated soils by a consortium of biosurfactant/bioemulsifier producing bacteria

(2014) R. Barin et al.   International Journal of Environmental Science and Technology

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

(2014) Sara Kleindienst et al.   ISME Journal

Heterologous production ofPseudomonas aeruginosarhamnolipid under anaerobic conditions for microbial enhanced oil recovery

(2014) F. Zhao et al.   JOURNAL OF APPLIED MICROBIOLOGY

AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics

(2014) Márcia Duarte et al.   Database-The Journal of Biological Databases and Curation

Conversion of crude oil to methane by a microbial consortium enriched from oil reservoir production waters

(2014) Carolina Berdugo-Clavijo et al.   Frontiers in Microbiology

Diversity of Benzylsuccinate Synthase-Like (bssA) Genes in Hydrocarbon-Polluted Marine Sediments Suggests Substrate-Dependent Clustering

(2013) Alejandro Acosta-González et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common

(2013) Dongshan An et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members

(2013) Boonfei Tan et al.   GENOME

Evidence that crude oil alkane activation proceeds by different mechanisms under sulfate-reducing and methanogenic conditions

(2013) C.M. Aitken et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

(2013) J. H. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems

(2012) Frederick von Netzer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coal induced production of a rhamnolipid biosurfactant by Pseudomonas stutzeri, isolated from the formation water of Jharia coalbed

(2012) Durgesh Narain Singh et al.   BIORESOURCE TECHNOLOGY

Biogeochemistry of Microbial Coal-Bed Methane

(2011) Dariusz Strąpoć et al.   Annual Review of Earth and Planetary Sciences

Biodegradation of petroleum sludge and petroleum polluted soil by a bacterial consortium: a laboratory study

(2011) G. D. Gojgic-Cvijovic et al.   BIODEGRADATION

Anaerobic degradation of non-substituted aromatic hydrocarbons

(2011) Rainer U Meckenstock et al.   CURRENT OPINION IN BIOTECHNOLOGY

Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin

(2011) Boris Wawrik et al.   FEMS MICROBIOLOGY ECOLOGY

The role of surfactants in coal bio-solubilisation

(2011) Sudong Yin et al.   FUEL PROCESSING TECHNOLOGY

The Surfactant of Legionella pneumophila Is Secreted in a TolC-Dependent Manner and Is Antagonistic toward Other Legionella Species

(2011) C. R. Stewart et al.   JOURNAL OF BACTERIOLOGY

Enhanced biosurfactant production through cloning of three genes and role of esterase in biosurfactant release

(2011) Kamaljeet Sekhon et al.   Microbial Cell Factories

Metabolic Flexibility of Sulfate-Reducing Bacteria

(2011) Caroline M. Plugge et al.   Frontiers in Microbiology

Could petroleum biodegradation be a joint achievement of aerobic and anaerobic microrganisms in deep sea reservoirs?

(2011) Georgiana F da Cruz et al.   AMB Express

Stimulation of Methane Generation from Nonproductive Coal by Addition of Nutrients or a Microbial Consortium

(2010) E. J. P. Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nonribosomal peptide synthetases: structures and dynamics

(2010) Matthias Strieker et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Diversity of Benzyl- and Alkylsuccinate Synthase Genes in Hydrocarbon-Impacted Environments and Enrichment Cultures

(2010) Amy V. Callaghan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Phenol Degradation in the Strictly Anaerobic Iron-Reducing Bacterium Geobacter metallireducens GS-15

(2009) K. M. Schleinitz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic metabolism of phenol in proteobacteria and further studies of phenylphosphate carboxylase

(2009) Sirko Schmeling et al.   ARCHIVES OF MICROBIOLOGY

Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds

(2009) John A. McIntosh et al.   NATURAL PRODUCT REPORTS

Anaerobic Biodegradation of n-Hexadecane by a Nitrate-Reducing Consortium

(2008) A. V. Callaghan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Active methanogenesis and acetate utilization in Powder River Basin coals, United States

(2008) Glenn Ulrich et al.   INTERNATIONAL JOURNAL OF COAL GEOLOGY

The ecology and biotechnology of sulphate-reducing bacteria

(2008) Gerard Muyzer et al.   NATURE REVIEWS MICROBIOLOGY