Exploitation of a Klebsiella Bacteriophage Receptor-Binding Protein as a Superior Biorecognition Molecule

Rapid and multiplex detection of nosocomial pathogens on a phage‐based magnetoresistive lab‐on‐chip platform

(2021) Alexandra P. Cunha et al.   BIOTECHNOLOGY AND BIOENGINEERING

Novel surface plasmon resonance biosensor that uses full‐length Det7 phage tail protein for rapid and selective detection of Salmonella enterica serovar Typhimurium

(2020) Seok Hywan Hyeon et al.   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Diversity and Function of Phage Encoded Depolymerases

(2020) Leandra E. Knecht et al.   Frontiers in Microbiology

A novel flow cytometry assay based on bacteriophage-derived proteins for Staphylococcus detection in blood

(2020) Susana P. Costa et al.   Scientific Reports

Bacteriophage Based Biosensors: Trends, Outcomes and Challenges

(2020) Zahra Aliakbar Ahovan et al.   Nanomaterials

Bacteriophage‐receptor binding proteins for multiplex detection of Staphylococcus and Enterococcus in blood

(2020) Sílvio B. Santos et al.   BIOTECHNOLOGY AND BIOENGINEERING

Specific Detection of Yersinia pestis Based on Receptor Binding Proteins of Phages

(2020) Friederike Born et al.   Pathogens

(Ph)ighting Phages: How Bacteria Resist Their Parasites

(2019) Jakob T. Rostøl et al.   Cell Host & Microbe

PHANOTATE: a novel approach to gene identification in phage genomes

(2019) Katelyn McNair et al.   BIOINFORMATICS

Ultrasensitive tantalum oxide nano-coated long-period gratings for detection of various biological targets

(2019) Monika Piestrzyńska et al.   BIOSENSORS & BIOELECTRONICS

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

Tail Fiber Protein-Immobilized Magnetic Nanoparticle-Based Affinity Approaches for Detection of Acinetobacter baumannii

(2019) Yi-Ling Bai et al.   ANALYTICAL CHEMISTRY

Modeling the Architecture of Depolymerase-Containing Receptor Binding Proteins in Klebsiella Phages

(2019) Agnieszka Latka et al.   Frontiers in Microbiology

Synthetic biology of modular endolysins

(2018) Hans Gerstmans et al.   BIOTECHNOLOGY ADVANCES

Biotechnological applications of bacteriophages: State of the art

(2018) Liliam K. Harada et al.   MICROBIOLOGICAL RESEARCH

COACH-D: improved protein–ligand binding sites prediction with refined ligand-binding poses through molecular docking

(2018) Qi Wu et al.   NUCLEIC ACIDS RESEARCH

Rapid label-free detection of E. coli using a novel SPR biosensor containing a fragment of tail protein from phage lambda

(2018) Hae Ja Shin et al.   PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY

Exploiting Bacteriophage Proteomes: The Hidden Biotechnological Potential

(2018) Sílvio B. Santos et al.   TRENDS IN BIOTECHNOLOGY

Characterization of a New Staphylococcus aureus Kayvirus Harboring a Lysin Active against Biofilms

(2018) et al.   Viruses-Basel

Effectiveness of Sensors Contact Metallization (Ti, Au, and Ru) and Biofunctionalization for Escherichia coli Detection

(2018) Sabina Górska et al.   SENSORS

Bacteriophage Sf6 Tailspike Protein for Detection of Shigella flexneri Pathogens

(2018) Sonja Kunstmann et al.   Viruses-Basel

Nonlytic Recombinant Phage Tail Fiber Protein for Specific Recognition of Pseudomonas aeruginosa

(2018) Yong He et al.   ANALYTICAL CHEMISTRY

Prevalence of healthcare-associated infections, estimated incidence and composite antimicrobial resistance index in acute care hospitals and long-term care facilities: results from two European point prevalence surveys, 2016 to 2017

(2018) Carl Suetens et al.   Eurosurveillance

Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages

(2018) Stephen Hayes et al.   Viruses-Basel

Phage-Borne Depolymerases Decrease Klebsiella pneumoniae Resistance to Innate Defense Mechanisms

(2018) Grazyna Majkowska-Skrobek et al.   Frontiers in Microbiology

Klebsiella Phage ΦK64-1 Encodes Multiple Depolymerases for Multiple Host Capsular Types

(2017) Yi-Jiun Pan et al.   JOURNAL OF VIROLOGY

Measurements of translation initiation from all 64 codons in E. coli

(2017) Ariel Hecht et al.   NUCLEIC ACIDS RESEARCH

Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus

(2017) Brian McDonnell et al.   Frontiers in Microbiology

Two T7-like Bacteriophages, K5-2 and K5-4, Each Encodes Two Capsule Depolymerases: Isolation and Functional Characterization

(2017) Pei-Fang Hsieh et al.   Scientific Reports

Identification and Analysis of a Novel Group of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus

(2016) Brian McDonnell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A broadband capacitive sensing method for label-free bacterial LPS detection

(2016) Artur Rydosz et al.   BIOSENSORS & BIOELECTRONICS

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Ligands for label-free detection of whole bacteria on biosensors: A review

(2016) Vincent Templier et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Development of an Assay for the Identification of Receptor Binding Proteins from Bacteriophages

(2016) David Simpson et al.   Viruses-Basel

Label-free Gram-negative bacteria detection using bacteriophage-adhesin-coated long-period gratings

(2016) Ewa Brzozowska et al.   Biomedical Optics Express

Mechanisms of Antimicrobial Resistance in ESKAPE Pathogens

(2016) Sirijan Santajit et al.   Biomed Research International

Global Dissemination of Carbapenemase-Producing Klebsiella pneumoniae: Epidemiology, Genetic Context, Treatment Options, and Detection Methods

(2016) Chang-Ro Lee et al.   Frontiers in Microbiology

Recognition of bacterial lipopolysaccharide using bacteriophage-adhesin-coated long-period gratings

(2015) Ewa Brzozowska et al.   BIOSENSORS & BIOELECTRONICS

Bacteriophages and Phage-Derived Proteins – Application Approaches

(2015) Zuzanna Drulis-Kawa et al.   CURRENT MEDICINAL CHEMISTRY

Exploring the interactions between bacteriophage-encoded glycan binding proteins and carbohydrates

(2015) David J Simpson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Aptamer-functionalized localized surface plasmon resonance sensor for the multiplexed detection of different bacterial species

(2015) Seung Min Yoo et al.   TALANTA

Optical and dielectric sensors based on antimicrobial peptides for microorganism diagnosis

(2014) Rafael R. Silva et al.   Frontiers in Microbiology

Phage receptor binding protein-based magnetic enrichment method as an aid for real time PCR detection of foodborne bacteria

(2013) Somayyeh Poshtiban et al.   ANALYST

Structure and Functional Analysis of the Host Recognition Device of Lactococcal Phage Tuc2009

(2013) B. Collins et al.   JOURNAL OF VIROLOGY

Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases

(2013) L Silvia Munoz-Price et al.   LANCET INFECTIOUS DISEASES

Bacteriophage Receptor Binding Protein Based Assays for the Simultaneous Detection of Campylobacter jejuni and Campylobacter coli

(2013) Muhammad A. Javed et al.   PLoS One

Isolation of a Bacteriophage Specific for a New Capsular Type of Klebsiella pneumoniae and Characterization of Its Polysaccharide Depolymerase

(2013) Chun-Ru Hsu et al.   PLoS One

Recent Advances in Bacteriophage Based Biosensors for Food-Borne Pathogen Detection

(2013) Amit Singh et al.   SENSORS

Bacteriophage tail-spike protein derivitized microresonator arrays for specific detection of pathogenic bacteria

(2013) Somayyeh Poshtiban et al.   SENSORS AND ACTUATORS B-CHEMICAL

Bacteriophage based probes for pathogen detection

(2012) Amit Singh et al.   ANALYST

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

(2012) Ambrish Roy et al.   NUCLEIC ACIDS RESEARCH

Specific detection of Campylobacter jejuni using the bacteriophage NCTC 12673 receptor binding protein as a probe

(2011) Amit Singh et al.   ANALYST

Label-free detection of Staphylococcus aureus in skin using real-time potentiometric biosensors based on carbon nanotubes and aptamers

(2011) Gustavo A. Zelada-Guillén et al.   BIOSENSORS & BIOELECTRONICS

Silica encapsulated SERS nanoprobe conjugated to the bacteriophage tailspike protein for targeted detection ofSalmonella

(2011) Li-Lin Tay et al.   CHEMICAL COMMUNICATIONS

Carbapenem-Resistant Enterobacteriaceae: Epidemiology and Prevention

(2011) N. Gupta et al.   CLINICAL INFECTIOUS DISEASES

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Bacteriophages and their genomes

(2011) Graham F Hatfull et al.   Current Opinion in Virology

Bacteriophage tailspike proteins as molecular probes for sensitive and selective bacterial detection

(2010) Amit Singh et al.   BIOSENSORS & BIOELECTRONICS

Evaluation of Paramagnetic Beads Coated with Recombinant Listeria Phage Endolysin–Derived Cell-Wall-Binding Domain Proteins for Separation of Listeria monocytogenes from Raw Milk in Combination with Culture-Based and Real-Time Polymerase Chain Reaction–Based Quantification

(2010) Georg Walcher et al.   Foodborne Pathogens and Disease

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Gamma-phage lysin PlyG sequence-based synthetic peptides coupled with Qdot-nanocrystals are useful for developing detection methods for Bacillus anthracis by using its surrogates, B. anthracis-Sterne and B. cereus-4342

(2009) Shilpakala Sainathrao et al.   BMC BIOTECHNOLOGY

The use of antibiotics to improve phage detection and enumeration by the double-layer agar technique

(2009) Sílvio B Santos et al.   BMC MICROBIOLOGY

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

(2008) Håkan Viklund et al.   BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

(2008) Rob Lavigne et al.   RESEARCH IN MICROBIOLOGY