Genome-Wide Identification and Comparative Profiling of MicroRNAs Reveal Flavonoid Biosynthesis in Two Contrasting Flower Color Cultivars of Tree Peony

PyWRKY26 and PybHLH3 cotargeted the PyMYB114 promoter to regulate anthocyanin biosynthesis and transport in red-skinned pears

(2020) Chuang Li et al.   Horticulture Research

The R2R3-MYB transcription factor GhMYB1a regulates flavonol and anthocyanin accumulation in Gerbera hybrida

(2020) Chunmei Zhong et al.   Horticulture Research

A blueberry MIR156a–SPL12 module coordinates the accumulation of chlorophylls and anthocyanins during fruit ripening

(2020) Xuyan Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Degradome, small RNAs and transcriptome sequencing of a high-nicotine cultivated tobacco uncovers miRNA’s function in nicotine biosynthesis

(2020) Jingjing Jin et al.   Scientific Reports

Germplasm resources and genetic breeding of Paeonia: a systematic review

(2020) Yong Yang et al.   Horticulture Research

Systematic identification of long non‐coding RNA s expressed during light‐induced anthocyanin accumulation in apple fruit

(2019) Tuo Yang et al.   PLANT JOURNAL

Genome-wide identification and comparative analysis of drought-related microRNAs in two maize inbred lines with contrasting drought tolerance by deep sequencing

(2019) Xuyang Liu et al.   PLoS One

Apple NAC transcription factor MdNAC52 regulates biosynthesis of anthocyanin and proanthocyanidin through MdMYB9 and MdMYB11

(2019) Qingguo Sun et al.   PLANT SCIENCE

A Novel R2R3-MYB Transcription Factor Contributes to Petal Blotch Formation by Regulating Organ-Specific Expression of PsCHS in Tree Peony (Paeonia suffruticosa)

(2018) Zhaoyu Gu et al.   PLANT AND CELL PHYSIOLOGY

Identification and expression profiles of putative leaf growth related microRNAs in maize (Zea mays L.) hybrid ADA313

(2018) Fatma Aydinoglu et al.   GENE

Transcriptomic Analysis Reveals Transcription Factors Related to Leaf Anthocyanin Biosynthesis in Paeonia qiui

(2017) Jianrang Luo et al.   MOLECULES

Identification and comparative profiling of miRNAs in herbaceous peony (Paeonia lactiflora Pall.) with red/yellow bicoloured flowers

(2017) Daqiu Zhao et al.   Scientific Reports

A Grapevine TTG2-Like WRKY Transcription Factor Is Involved in Regulating Vacuolar Transport and Flavonoid Biosynthesis

(2017) Alessandra Amato et al.   Frontiers in Plant Science

Identification of MicroRNAs and Their Target Genes Related to the Accumulation of Anthocyanins in Litchi chinensis by High-Throughput Sequencing and Degradome Analysis

(2017) Rui Liu et al.   Frontiers in Plant Science

Response of miR156-SPL Module during the Red Peel Coloration of Bagging-Treated Chinese Sand Pear (Pyrus pyrifolia Nakai)

(2017) Minjie Qian et al.   Frontiers in Physiology

Overexpression of herbaceous peony miR156e-3p improves anthocyanin accumulation in transgenic Arabidopsis thaliana lateral branches

(2017) Daqiu Zhao et al.   3 Biotech

Overexpression of herbaceous peony miR156e-3p improves anthocyanin accumulation in transgenic Arabidopsis thaliana lateral branches

(2017) Daqiu Zhao et al.   3 Biotech

Uncovering microRNA-mediated response to SO2 stress in Arabidopsis thaliana by deep sequencing

(2016) Lihong Li et al.   JOURNAL OF HAZARDOUS MATERIALS

Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis

(2016) Walter Verweij et al.   PLANT CELL

Identification and Expression Analyses of miRNAs from Two Contrasting Flower Color Cultivars of Canna by Deep Sequencing

(2016) Sribash Roy et al.   PLoS One

Extensive Transcriptome Changes Underlying the Flower Color Intensity Variation in Paeonia ostii

(2016) Lexuan Gao et al.   Frontiers in Plant Science

Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr

(2016) Fang Tang et al.   Frontiers in Plant Science

Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors

(2015) Hui Zhou et al.   PLANT JOURNAL

Transcriptomic Analysis of Paeonia delavayi Wild Population Flowers to Identify Differentially Expressed Genes Involved in Purple-Red and Yellow Petal Pigmentation

(2015) Qianqian Shi et al.   PLoS One

Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes

(2015) Wenjia Xu et al.   TRENDS IN PLANT SCIENCE

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Biogenesis, evolution, and functions of plant microRNAs

(2013) P. P. Pashkovskiy et al.   BIOCHEMISTRY-MOSCOW

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Overexpression of Ps-CHI1, a homologue of the chalcone isomerase gene from tree peony (Paeonia suffruticosa), reduces the intensity of flower pigmentation in transgenic tobacco

(2013) Lin Zhou et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis

(2013) Alexander Maier et al.   PLANT JOURNAL

Integrative Analysis of miRNA and mRNA Profiles in Response to Ethylene in Rose Petals during Flower Opening

(2013) Haixia Pei et al.   PLoS One

Comparative profiling of miRNA expression in developing seeds of high linoleic and high oleic safflower (Carthamus tinctorius L.) plants

(2013) Shijiang Cao et al.   Frontiers in Plant Science

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

RhNAC2 and RhEXPA4 Are Involved in the Regulation of Dehydration Tolerance during the Expansion of Rose Petals

(2012) F. Dai et al.   PLANT PHYSIOLOGY

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

Flavonoid constituents and antioxidant capacity in flowers of different Zhongyuan tree penoy cultivars

(2011) Jinling Fan et al.   Journal of Functional Foods

Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type

(2010) Qiang Xu et al.   BMC GENOMICS

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

Flavonoid Composition and Antioxidant Activity of Tree Peony (Paeonia SectionMoutan) Yellow Flowers

(2009) Chonghui Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

(2008) P. P. Chan et al.   NUCLEIC ACIDS RESEARCH