- Home
- Publications
- Publication Search
- Publication Details
Title
A deep learning framework for characterization of genotype data
Authors
Keywords
-
Journal
G3-Genes Genomes Genetics
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2022-01-26
DOI
10.1093/g3journal/jkac020
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Visualizing population structure with variational autoencoders
- (2021) C J Battey et al. G3-Genes Genomes Genetics
- Creating artificial human genomes using generative neural networks
- (2021) Burak Yelmen et al. PLoS Genetics
- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- Predicting the landscape of recombination using deep learning
- (2020) Jeffrey R Adrion et al. MOLECULAR BIOLOGY AND EVOLUTION
- On rare variants in principal component analysis of population stratification
- (2020) Shengqing Ma et al. BMC GENETICS
- A review of UMAP in population genetics
- (2020) Alex Diaz-Papkovich et al. JOURNAL OF HUMAN GENETICS
- Single-cell RNA-seq denoising using a deep count autoencoder
- (2019) Gökcen Eraslan et al. Nature Communications
- Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics
- (2019) Héléna A. Gaspar et al. BMC BIOINFORMATICS
- Deep learning: new computational modelling techniques for genomics
- (2019) Gökcen Eraslan et al. NATURE REVIEWS GENETICS
- Sparse Convolutional Denoising Autoencoders for Genotype Imputation
- (2019) Junjie Chen et al. Genes
- Supervised Machine Learning for Population Genetics: A New Paradigm
- (2018) Daniel R. Schrider et al. TRENDS IN GENETICS
- Interpretable dimensionality reduction of single cell transcriptome data with deep generative models
- (2018) Jiarui Ding et al. Nature Communications
- A universal SNP and small-indel variant caller using deep neural networks
- (2018) Ryan Poplin et al. NATURE BIOTECHNOLOGY
- A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots
- (2018) Daniel J. Lawson et al. Nature Communications
- The Genetic Ancestry of Modern Indus Valley Populations from Northwest India
- (2018) Ajai K. Pathak et al. AMERICAN JOURNAL OF HUMAN GENETICS
- OUTRIDER: A Statistical Method for Detecting Aberrantly Expressed Genes in RNA Sequencing Data
- (2018) Felix Brechtmann et al. AMERICAN JOURNAL OF HUMAN GENETICS
- A primer on deep learning in genomics
- (2018) James Zou et al. NATURE GENETICS
- Variants from the deep
- (2018) Tal Nawy NATURE METHODS
- Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe
- (2018) Thiseas C. Lamnidis et al. Nature Communications
- AutoImpute: Autoencoder based imputation of single-cell RNA-seq data
- (2018) Divyanshu Talwar et al. Scientific Reports
- Tracing the peopling of the world through genomics
- (2017) Rasmus Nielsen et al. NATURE
- Genomic insights into the origin of farming in the ancient Near East
- (2016) Iosif Lazaridis et al. NATURE
- Massive migration from the steppe was a source for Indo-European languages in Europe
- (2015) Wolfgang Haak et al. NATURE
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- Deep learning
- (2015) Yann LeCun et al. NATURE
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- Machine learning applications in genetics and genomics
- (2015) Maxwell W. Libbrecht et al. NATURE REVIEWS GENETICS
- Highlighting nonlinear patterns in population genetics datasets
- (2015) Gregorio Alanis-Lobato et al. Scientific Reports
- Second-generation PLINK: rising to the challenge of larger and richer datasets
- (2015) Christopher C Chang et al. GigaScience
- Ancient human genomes suggest three ancestral populations for present-day Europeans
- (2014) Iosif Lazaridis et al. NATURE
- A Genetic Atlas of Human Admixture History
- (2014) G. Hellenthal et al. SCIENCE
- A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations
- (2012) Chaolong Wang et al. PLoS Genetics
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- Quantification of Population Structure Using Correlated SNPs by Shrinkage Principal Components
- (2010) Fei Zou et al. HUMAN HEREDITY
- Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture
- (2010) O. Francois et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome-wide Insights into the Patterns and Determinants of Fine-Scale Population Structure in Humans
- (2009) Shameek Biswas et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Correlation between Genetic and Geographic Structure in Europe
- (2008) Oscar Lao et al. CURRENT BIOLOGY
- Imputing missing genotypic data of single-nucleotide polymorphisms using neural networks
- (2008) Yan V Sun et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- Accounting for ancestry: population substructure and genome-wide association studies
- (2008) C. Tian et al. HUMAN MOLECULAR GENETICS
- Genes mirror geography within Europe
- (2008) John Novembre et al. NATURE
- Genotype, haplotype and copy-number variation in worldwide human populations
- (2008) Mattias Jakobsson et al. NATURE
- Interpreting principal component analyses of spatial population genetic variation
- (2008) John Novembre et al. NATURE GENETICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now