GNIFdb: a neoantigen intrinsic feature database for glioma

NEPdb: A Database of T-Cell Experimentally-Validated Neoantigens and Pan-Cancer Predicted Neoepitopes for Cancer Immunotherapy

(2021) Jiaqi Xia et al.   Frontiers in Immunology

neoDL: a novel neoantigen intrinsic feature-based deep learning model identifies IDH wild-type glioblastomas with the longest survival

(2021) Ting Sun et al.   BMC BIOINFORMATICS

dbPepNeo: a manually curated database for human tumor neoantigen peptides

(2020) Xiaoxiu Tan et al.   Database-The Journal of Biological Databases and Curation

Prognostic Gene Discovery in Glioblastoma Patients using Deep Learning

(2019) Kelvin Wong et al.   Cancers

Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma

(2019) Junfei Zhao et al.   NATURE MEDICINE

An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma

(2019) Cyril Neftel et al.   CELL

Evolving neoantigen profiles in colorectal cancers with DNA repair defects

(2019) Giuseppe Rospo et al.   Genome Medicine

Neoantigen quality, not quantity

(2019) Nicholas McGranahan et al.   Science Translational Medicine

Population-level distribution and putative immunogenicity of cancer neoepitopes

(2018) Mary A. Wood et al.   BMC CANCER

Genomic correlates of response to immune checkpoint blockade in microsatellite-stable solid tumors

(2018) Diana Miao et al.   NATURE GENETICS

TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis

(2018) Jingcheng Wu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

PASNet: pathway-associated sparse deep neural network for prognosis prediction from high-throughput data

(2018) Jie Hao et al.   BMC BIOINFORMATICS

Hypermutagenesis in untreated adult gliomas due to inherited mismatch mutations

(2018) Jason K. Sa et al.   INTERNATIONAL JOURNAL OF CANCER

The molecular landscape of glioma in patients with Neurofibromatosis 1

(2018) Fulvio D’Angelo et al.   NATURE MEDICINE

The Immune Epitope Database (IEDB): 2018 update

(2018) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq

(2017) Andrew S. Venteicher et al.   SCIENCE

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade

(2017) Pornpimol Charoentong et al.   Cell Reports

Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

(2016) Michele Ceccarelli et al.   CELL

Systemic RNA delivery to dendritic cells exploits antiviral defence for cancer immunotherapy

(2016) Lena M. Kranz et al.   NATURE

The role of microglia and macrophages in glioma maintenance and progression

(2016) Dolores Hambardzumyan et al.   NATURE NEUROSCIENCE

Genomic correlates of response to CTLA-4 blockade in metastatic melanoma

(2015) E. M. Van Allen et al.   SCIENCE

Neoantigens in cancer immunotherapy

(2015) T. N. Schumacher et al.   SCIENCE

Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer

(2015) N. A. Rizvi et al.   SCIENCE

PI3 kinase mutations and mutational load as poor prognostic markers in diffuse glioma patients

(2015) Kaspar Draaisma et al.   Acta Neuropathologica Communications

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

(2014) Fei Duan et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Tumor-Infiltrating Lymphocytes in Glioblastoma Are Associated with Specific Genomic Alterations and Related to Transcriptional Class

(2013) W. C. Rutledge et al.   CLINICAL CANCER RESEARCH

Mutational heterogeneity in cancer and the search for new cancer-associated genes

(2013) Michael S. Lawrence et al.   NATURE

Exploiting the Mutanome for Tumor Vaccination

(2012) J. C. Castle et al.   CANCER RESEARCH

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

(2010) Roel G.W. Verhaak et al.   CANCER CELL

ST-scale as a novel amino acid descriptor and its application in QSAM of peptides and analogues

(2009) Li Yang et al.   AMINO ACIDS

Interpretable Numerical Descriptors of Amino Acid Space

(2009) Alexander G. Georgiev   JOURNAL OF COMPUTATIONAL BIOLOGY