SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load
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Title
SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load
Authors
Keywords
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Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-02-01
DOI
10.1038/s41467-022-28287-8
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Note: Only part of the references are listed.- Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response
- (2021) Jing-wen Lin et al. Cell Host & Microbe
- TMPRSS11D and TMPRSS13 Activate the SARS-CoV-2 Spike Protein
- (2021) Mai Kishimoto et al. Viruses-Basel
- Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7
- (2021) Nicholas G. Davies et al. NATURE
- Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates
- (2021) Barbara Schrörs et al. PLoS One
- 2019 novel coronavirus is undergoing active recombination
- (2020) Huiguang Yi CLINICAL INFECTIOUS DISEASES
- COVID-19: preparing for superspreader potential among Umrah pilgrims to Saudi Arabia
- (2020) Shahul H Ebrahim et al. LANCET
- An interactive web-based dashboard to track COVID-19 in real time
- (2020) Ensheng Dong et al. LANCET INFECTIOUS DISEASES
- Clinical characteristics of 24 asymptomatic infections with COVID-19 screened among close contacts in Nanjing, China
- (2020) Zhiliang Hu et al. Science China-Life Sciences
- Estimation of Coronavirus Disease 2019 (COVID-19) Burden and Potential for International Dissemination of Infection From Iran
- (2020) Ashleigh R. Tuite et al. ANNALS OF INTERNAL MEDICINE
- Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China
- (2020) Jing Lu et al. CELL
- Tale of three seeding patterns of SARS-CoV-2 in Saudi Arabia
- (2020) Ziad A Memish et al. LANCET INFECTIOUS DISEASES
- A SARS-CoV-2 protein interaction map reveals targets for drug repurposing
- (2020) David E. Gordon et al. NATURE
- The Multifarious Role of 14-3-3 Family of Proteins in Viral Replication
- (2020) Kavitha Ganesan Nathan et al. Viruses-Basel
- Biochemical characterization of SARS-CoV-2 nucleocapsid protein
- (2020) Weihong Zeng et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- The Global Phosphorylation Landscape of SARS-CoV-2 Infection
- (2020) Mehdi Bouhaddou et al. CELL
- Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus
- (2020) Bette Korber et al. CELL
- Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses
- (2020) Ayal B. Gussow et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SARS-CoV-2 viral load predicts COVID-19 mortality
- (2020) Elisabet Pujadas et al. Lancet Respiratory Medicine
- A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
- (2020) Andrew Rambaut et al. Nature Microbiology
- Effects of SARS‐CoV‐2 mutations on protein structures and intraviral protein‐protein interactions
- (2020) Siqi Wu et al. JOURNAL OF MEDICAL VIROLOGY
- Evolutionary dynamics of SARS‐CoV‐2 nucleocapsid (N) protein and its consequences
- (2020) M. Shaminur Rahman et al. JOURNAL OF MEDICAL VIROLOGY
- Two distinct immunopathological profiles in autopsy lungs of COVID-19
- (2020) Ronny Nienhold et al. Nature Communications
- In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age
- (2020) Nicole A. P. Lieberman et al. PLOS BIOLOGY
- Temporal signal and the phylodynamic threshold of SARS-CoV-2
- (2020) Sebastian Duchene et al. Virus Evolution
- Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
- (2020) Erik Volz et al. CELL
- Phylogenetic analysis of SARS-CoV-2 data is difficult
- (2020) Benoit Morel et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phosphoregulation of Phase Separation by the SARS-CoV-2 N Protein Suggests a Biophysical Basis for its Dual Functions
- (2020) Christopher R. Carlson et al. MOLECULAR CELL
- Nucleocapsid protein of SARS-CoV-2 phase separates into RNA-rich polymerase-containing condensates
- (2020) Adriana Savastano et al. Nature Communications
- Stability of SARS-CoV-2 phylogenies
- (2020) Yatish Turakhia et al. PLoS Genetics
- Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling
- (2019) Philip V'kovski et al. eLife
- NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis
- (2019) Guangyan Zhou et al. NUCLEIC ACIDS RESEARCH
- LFQ-Analyst: An Easy-To-Use Interactive Web Platform To Analyze and Visualize Label-Free Proteomics Data Preprocessed with MaxQuant
- (2019) Anup D. Shah et al. JOURNAL OF PROTEOME RESEARCH
- Arabidopsis proteome and the mass spectral assay library
- (2019) Huoming Zhang et al. Scientific Data
- Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes
- (2019) Ruby J Roach et al. NUCLEIC ACIDS RESEARCH
- Ubiquitin ligases HUWE1 and NEDD4 cooperatively control signal-dependent PRC2-Ezh1α/β-mediated adaptive stress response pathway in skeletal muscle cells
- (2019) Peng Liu et al. Epigenetics & Chromatin
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Nextstrain: real-time tracking of pathogen evolution
- (2018) James Hadfield et al. BIOINFORMATICS
- Modeling the Growth and Decline of Pathogen Effective Population Size Provides Insight into Epidemic Dynamics and Drivers of Antimicrobial Resistance
- (2018) Erik M Volz et al. SYSTEMATIC BIOLOGY
- Glucose-regulated phosphorylation of TET2 by AMPK reveals a pathway linking diabetes to cancer
- (2018) Di Wu et al. NATURE
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- GISAID: Global initiative on sharing all influenza data – from vision to reality
- (2017) Yuelong Shu et al. Eurosurveillance
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- The Ensembl gene annotation system
- (2016) Bronwen L. Aken et al. Database-The Journal of Biological Databases and Curation
- The SARS coronavirus nucleocapsid protein – Forms and functions
- (2014) Chung-ke Chang et al. ANTIVIRAL RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Nucleocapsid Phosphorylation and RNA Helicase DDX1 Recruitment Enables Coronavirus Transition from Discontinuous to Continuous Transcription
- (2014) Chia-Hsin Wu et al. Cell Host & Microbe
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Coronavirus Nucleocapsid Is a Multifunctional Protein
- (2014) Ruth McBride et al. Viruses-Basel
- Transient Oligomerization of the SARS-CoV N Protein – Implication for Virus Ribonucleoprotein Packaging
- (2013) Chung-ke Chang et al. PLoS One
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- The Coronavirus Nucleocapsid Protein Is Dynamically Associated with the Replication-Transcription Complexes
- (2010) M. H. Verheije et al. JOURNAL OF VIROLOGY
- Phosphorylation of the arginine/serine dipeptide-rich motif of the severe acute respiratory syndrome coronavirus nucleocapsid protein modulates its multimerization, translation inhibitory activity and cellular localization
- (2008) Tsui-Yi Peng et al. FEBS Journal
- Glycogen Synthase Kinase-3 Regulates the Phosphorylation of Severe Acute Respiratory Syndrome Coronavirus Nucleocapsid Protein and Viral Replication
- (2008) Chia-Hsin Wu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
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