The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis
Published 2022 View Full Article
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Title
The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis
Authors
Keywords
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Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-01-11
DOI
10.1038/s41467-021-27690-x
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Note: Only part of the references are listed.- Nurse cell–derived small RNAs define paternal epigenetic inheritance in Arabidopsis
- (2021) Jincheng Long et al. SCIENCE
- Genome-wide redistribution of 24-nt siRNAs in rice gametes
- (2020) Chenxin Li et al. GENOME RESEARCH
- Regulation of Rice Tillering by RNA-Directed DNA Methylation at Miniature Inverted-Repeat Transposable Elements
- (2020) Le Xu et al. Molecular Plant
- Analysis of Global Methylome and Gene Expression during Carbon Reserve Mobilization in Stems under Soil Drying
- (2020) Guanqun Wang et al. PLANT PHYSIOLOGY
- Abundant expression of maternal siRNAs is a conserved feature of seed development
- (2020) Jeffrey W. Grover et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multifaceted roles of RNA polymerase IV in plant growth and development
- (2020) Shuai Zhang et al. JOURNAL OF EXPERIMENTAL BOTANY
- The diverse roles of DNA methylation in mammalian development and disease
- (2019) Maxim V. C. Greenberg et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Locus-specific control of the de novo DNA methylation pathway in Arabidopsis by the CLASSY family
- (2018) Ming Zhou et al. NATURE GENETICS
- Dynamics and function of DNA methylation in plants
- (2018) Huiming Zhang et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa
- (2018) Jeffrey W. Grover et al. PLANT JOURNAL
- Dynamic DNA Methylation in Plant Growth and Development
- (2018) Arthur Bartels et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- PIWI-interacting RNAs: small RNAs with big functions
- (2018) Deniz M. Ozata et al. NATURE REVIEWS GENETICS
- Exploiting induced and natural epigenetic variation for crop improvement
- (2017) Nathan M. Springer et al. NATURE REVIEWS GENETICS
- ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
- (2017) Jamie Waese et al. PLANT CELL
- Araport11: a complete reannotation of theArabidopsis thalianareference genome
- (2017) Chia-Yi Cheng et al. PLANT JOURNAL
- The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status
- (2017) Dongming Li et al. eLife
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- A high resolution map of theArabidopsis thalianadevelopmental transcriptome based on RNA-seq profiling
- (2016) Anna V. Klepikova et al. PLANT JOURNAL
- Improved Placement of Multi-mapping Small RNAs
- (2016) Nathan R. Johnson et al. G3-Genes Genomes Genetics
- RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules
- (2015) Ming Zhou et al. CURRENT OPINION IN PLANT BIOLOGY
- Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm
- (2015) Meilina Ong-Abdullah et al. NATURE
- circlize implements and enhances circular visualization in R
- (2014) Zuguang Gu et al. BIOINFORMATICS
- Accessing epigenetic variation in the plant methylome
- (2014) K. D. Kim et al. Briefings in Functional Genomics
- Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE
- (2014) Jiamu Du et al. MOLECULAR CELL
- Arabidopsis VIM Proteins Regulate Epigenetic Silencing by Modulating DNA Methylation and Histone Modification in Cooperation with MET1
- (2014) Jeongsik Kim et al. Molecular Plant
- RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
- (2014) Marjori A. Matzke et al. NATURE REVIEWS GENETICS
- Epigenetic reprogramming in plant sexual reproduction
- (2014) Tomokazu Kawashima et al. NATURE REVIEWS GENETICS
- The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
- (2013) Assaf Zemach et al. CELL
- Genome-Wide Analysis of DNA Methylation in Soybean
- (2013) Qing-Xin Song et al. Molecular Plant
- Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
- (2013) Julie A. Law et al. NATURE
- Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
- (2013) Hume Stroud et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
- (2013) J. A. Rodrigues et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV
- (2013) H. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDOPS: high-performance genomic feature operations
- (2012) Shane Neph et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
- (2012) J. I. Gent et al. GENOME RESEARCH
- Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing
- (2012) Nidia Sánchez-León et al. JOURNAL OF EXPERIMENTAL BOTANY
- Epigenetic Remodeling of Meiotic Crossover Frequency in Arabidopsis thaliana DNA Methyltransferase Mutants
- (2012) Nataliya E. Yelina et al. PLoS Genetics
- methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
- (2012) Altuna Akalin et al. GENOME BIOLOGY
- A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo
- (2011) E. Rajakumara et al. GENES & DEVELOPMENT
- In-Depth Temporal Transcriptome Profiling Reveals a Crucial Developmental Switch with Roles for RNA Processing and Organelle Metabolism That Are Essential for Germination in Arabidopsis
- (2011) R. Narsai et al. PLANT PHYSIOLOGY
- SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV
- (2011) Julie A. Law et al. PLoS Genetics
- An endogenous, systemic RNAi pathway in plants
- (2010) Patrice Dunoyer et al. EMBO JOURNAL
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Local DNA hypomethylation activates genes in rice endosperm
- (2010) A. Zemach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
- (2008) Hans A Kestler et al. BMC BIOINFORMATICS
- Subunit Compositions of the RNA-Silencing Enzymes Pol IV and Pol V Reveal Their Origins as Specialized Forms of RNA Polymerase II
- (2008) Thomas S. Ream et al. MOLECULAR CELL
- Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis
- (2008) Hye Ryun Woo et al. PLoS Genetics
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