Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa

Genomic inferences of domestication events are corroborated by written records in Brassica rapa

(2017) Xinshuai Qi et al.   MOLECULAR ECOLOGY

AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci inArabidopsis thaliana

(2017) Feng Wang et al.   PLANT JOURNAL

A Small RNA Pathway Mediates Allelic Dosage in Endosperm

(2017) Robert M. Erdmann et al.   Cell Reports

Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa

(2016) Feng Cheng et al.   NEW PHYTOLOGIST

Improved Placement of Multi-mapping Small RNAs

(2016) Nathan R. Johnson et al.   G3-Genes Genomes Genetics

DNA Methylation Signatures of the Plant Chromomethyltransferases

(2016) Quentin Gouil et al.   PLoS Genetics

PIWI-Interacting RNA: Its Biogenesis and Functions

(2015) Yuka W. Iwasaki et al.   Annual Review of Biochemistry

Silencing of active transposable elements in plants

(2015) Dalen Fultz et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification, characterization and diversification of non-autonomous hAT transposons and unknown insertions in Brassica

(2015) Faisal Nouroz et al.   Genes & Genomics

The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

(2015) Tanya Z. Berardini et al.   GENESIS

RNA-mediated epigenetic regulation of gene expression

(2015) Daniel Holoch et al.   NATURE REVIEWS GENETICS

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

(2015) Qing Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting

(2014) Daniela Pignatta et al.   eLife

Genomic Imprinting: Insights From Plants

(2013) Mary Gehring   Annual Review of Genetics

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

P-MITE: a database for plant miniature inverted-repeat transposable elements

(2013) Jiongjiong Chen et al.   NUCLEIC ACIDS RESEARCH

ShortStack: Comprehensive annotation and quantification of small RNA genes

(2013) M. J. Axtell   RNA

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos

(2012) Michael D. Nodine et al.   NATURE

A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa

(2012) Xia Li et al.   PLoS One

Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds

(2012) J. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maternal Epigenetic Pathways Control Parental Contributions to Arabidopsis Early Embryogenesis

(2011) Daphné Autran et al.   CELL

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

An Atypical Epigenetic Mechanism Affects Uniparental Expression of Pol IV-Dependent siRNAs

(2011) Rebecca A. Mosher et al.   PLoS One

Paramutation and Development

(2010) Jay B. Hollick   Annual Review of Cell and Developmental Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A rich TILLING resource for studying gene function in Brassica rapa

(2010) Pauline Stephenson et al.   BMC PLANT BIOLOGY

Maternal control of Pol IV-dependent siRNAs in Arabidopsis endosperm

(2010) Rebecca A. Mosher   NEW PHYTOLOGIST

Small RNAs as Guardians of the Genome

(2009) Colin D. Malone et al.   CELL

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

(2009) Rebecca A. Mosher et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

(2008) R. A. Mosher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing

(2008) J. Brennecke et al.   SCIENCE