Comprehensive analysis of epigenetic modifications and immune-cell infiltration in tissues from patients with systemic lupus erythematosus

Identification of key biomarkers and immune infiltration in systemic lupus erythematosus by integrated bioinformatics analysis

(2021) Xingwang Zhao et al.   Journal of Translational Medicine

The multifaceted functional role of DNA methylation in immune-mediated rheumatic diseases

(2020) Matteo Vecellio et al.   CLINICAL RHEUMATOLOGY

Systemic Lupus Erythematosus (SLE) Therapy: The Old and the New

(2020) Fabio Basta et al.   Rheumatology and Therapy

Identification of the tubulointerstitial infiltrating immune cell landscape and immune marker related molecular patterns in lupus nephritis using bioinformatics analysis

(2020) Lu Zhang et al.   Annals of Translational Medicine

Preclinical and early systemic lupus erythematosus

(2019) Mariele Gatto et al.   BEST PRACTICE & RESEARCH IN CLINICAL RHEUMATOLOGY

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Management strategies and future directions for systemic lupus erythematosus in adults

(2019) Laura Durcan et al.   LANCET

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

Signaling Pathways of Type I and Type III Interferons and Targeted Therapies in Systemic Lupus Erythematosus

(2019) I-Tsu Chyuan et al.   Cells

LncRNA MYCNOS facilitates proliferation and invasion in hepatocellular carcinoma by regulating miR-340

(2019) Junfeng Yu et al.   Human Cell

A Talented Duo: IFIT1 and IFIT3 Patrol Viral RNA Caps

(2018) Youn Jung Choi et al.   IMMUNITY

Noncoding RNA:RNA Regulatory Networks in Cancer

(2018) Jia Chan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Immune Cell Infiltration and Tertiary Lymphoid Structures as Determinants of Antitumor Immunity

(2018) Victor H. Engelhard et al.   JOURNAL OF IMMUNOLOGY

Development of a Validated Interferon Score Using NanoString Technology

(2018) Hanna Kim et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Elevated IFIT3 Contributes to Abnormal Overactive cGAS-STING Signaling in Human Systemic Lupus Erythematosus Monocytes

(2018) Jiehua Wang et al.   Arthritis & Rheumatology

Expression of the OAS Gene Family Is Highly Modulated in Subjects Affected by Juvenile Dermatomyositis, Resembling an Immune Response to a dsRNA Virus Infection

(2018) Giuseppe Musumeci et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Immunometabolism in systemic lupus erythematosus

(2017) Laurence Morel   Nature Reviews Rheumatology

IFI44Lpromoter methylation as a blood biomarker for systemic lupus erythematosus

(2016) Ming Zhao et al.   ANNALS OF THE RHEUMATIC DISEASES

The critical role of epigenetics in systemic lupus erythematosus and autoimmunity

(2016) Hai Long et al.   JOURNAL OF AUTOIMMUNITY

Dendritic Cells in Systemic Lupus Erythematosus: From Pathogenic Players to Therapeutic Tools

(2016) Jared Klarquist et al.   MEDIATORS OF INFLAMMATION

PARP9 and PARP14 cross-regulate macrophage activation via STAT1 ADP-ribosylation

(2016) Hiroshi Iwata et al.   Nature Communications

Robust enumeration of cell subsets from tissue expression profiles

(2015) Aaron M Newman et al.   NATURE METHODS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Decreased miR-26a Expression Correlates with the Progression of Podocyte Injury in Autoimmune Glomerulonephritis

(2014) Osamu Ichii et al.   PLoS One

The Pathology of T Cells in Systemic Lupus Erythematosus

(2014) Anselm Mak et al.   Journal of Immunology Research

Anti-interferon alpha treatment in SLE

(2013) Kyriakos A. Kirou et al.   CLINICAL IMMUNOLOGY

Inferring tumour purity and stromal and immune cell admixture from expression data

(2013) Kosuke Yoshihara et al.   Nature Communications

Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits

(2013) Suman Ghosal et al.   Frontiers in Genetics

Robust rank aggregation for gene list integration and meta-analysis

(2012) Raivo Kolde et al.   BIOINFORMATICS

miRcode: a map of putative microRNA target sites in the long non-coding transcriptome

(2012) Ashwini Jeggari et al.   BIOINFORMATICS

Use of type I interferon-inducible mRNAs as pharmacodynamic markers and potential diagnostic markers in trials with sifalimumab, an anti-IFNα antibody, in systemic lupus erythematosus

(2012) Yihong Yao et al.   ARTHRITIS RESEARCH & THERAPY

Viperin, a key player in the antiviral response

(2011) Sandy Mattijssen et al.   MICROBES AND INFECTION

A diverse range of gene products are effectors of the type I interferon antiviral response

(2011) John W. Schoggins et al.   NATURE

miRTarBase: a database curates experimentally validated microRNA–target interactions

(2010) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS