Identification of immune-related genes and susceptible population of pulmonary tuberculosis by constructing TF-miRNA-mRNA regulatory network

circRNA circ_102049 Implicates in Pancreatic Ductal Adenocarcinoma Progression through Activating CD80 by Targeting miR-455-3p

(2021) Jie Zhu et al.   MEDIATORS OF INFLAMMATION

Prognostic Significance of Autophagy-Relevant Gene Markers in Colorectal Cancer

(2021) Qinglian He et al.   Frontiers in Oncology

The active ingredients and mechanisms of Longchai Jiangxue Formula in treating PV, based on UPLC/Q-TOF-MS/MS, systematic pharmacology, and molecular biology validation

(2021) Jing Ming et al.   BIOMEDICINE & PHARMACOTHERAPY

Mycobacterium tuberculosis Limits Host Glycolysis and IL-1β by Restriction of PFK-M via MicroRNA-21

(2020) Emer E. Hackett et al.   Cell Reports

The ESX-1 Virulence Factors Downregulate miR-147-3p in Mycobacterium marinum-Infected Macrophages

(2020) Xiaoshu Zuo et al.   INFECTION AND IMMUNITY

Down-Regulation of miR-378d Increased Rab10 Expression to Help Clearance of Mycobacterium tuberculosis in Macrophages

(2020) Yifan Zhu et al.   Frontiers in Cellular and Infection Microbiology

Tuberculosis Preventive Treatment Scale-Up Among Antiretroviral Therapy Patients — 16 Countries Supported by the U.S. President’s Emergency Plan for AIDS Relief, 2017–2019

(2020) Michael Melgar et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Molecular epidemiological study of multidrug-resistant tuberculosis isolated from sputum samples in Eastern Cape, South Africa

(2020) Nolwazi Londiwe Bhembe et al.   INFECTION GENETICS AND EVOLUTION

Mycobacterium tuberculosis Inhibits Autocrine Type I IFN Signaling to Increase Intracellular Survival

(2019) Dallas A. Banks et al.   JOURNAL OF IMMUNOLOGY

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

A Novel Approach in Treatment of Tuberculosis by Targeting Drugs to Infected Macrophages Using Biodegradable Nanoparticles

(2018) Shivangi et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Lipid droplet formation in Mycobacterium tuberculosis infected macrophages requires IFN-γ/HIF-1α signaling and supports host defense

(2018) Matthew Knight et al.   PLoS Pathogens

Estrogen receptor β promotes the vasculogenic mimicry (VM) and cell invasion via altering the lncRNA-MALAT1/miR-145-5p/NEDD9 signals in lung cancer

(2018) Weiwei Yu et al.   ONCOGENE

Analysis of transcription factors, microRNAs and cytokines involved in T lymphocyte differentiation in patients with tuberculosis after directly observed treatment short-course

(2017) Nancy Elizabeth Corral-Fernández et al.   TUBERCULOSIS

MicroRNA 26a (miR-26a)/KLF4 and CREB-C/EBPβ regulate innate immune signaling, the polarization of macrophages and the trafficking of Mycobacterium tuberculosis to lysosomes during infection

(2017) Sanjaya Kumar Sahu et al.   PLoS Pathogens

Type I IFN Inhibits Alternative Macrophage Activation duringMycobacterium tuberculosisInfection and Leads to Enhanced Protection in the Absence of IFN-γ Signaling

(2016) Lúcia Moreira-Teixeira et al.   JOURNAL OF IMMUNOLOGY

The Transcriptional Signature of Active Tuberculosis Reflects Symptom Status in Extra-Pulmonary and Pulmonary Tuberculosis

(2016) Simon Blankley et al.   PLoS One

Roles of endoplasmic reticulum stress-mediated apoptosis in M1-polarized macrophages during mycobacterial infections

(2016) Yun-Ji Lim et al.   Scientific Reports

NOD-2 and TLR-4 Signaling Reinforces the Efficacy of Dendritic Cells and Reduces the Dose of TB Drugs against Mycobacterium tuberculosis

(2015) Nargis Khan et al.   Journal of Innate Immunity

Lack of Association Between the IL1B (−511 and +3954), IL1RN VNTR Polymorphisms and Tuberculosis Risk: A Meta-analysis

(2015) Qiu-Pin Huang et al.   LUNG

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

(2014) Rekin's Janky et al.   PLoS Computational Biology

CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data

(2013) Gabriela Bindea et al.   BIOINFORMATICS

Type I IFN Inhibits Innate IL-10 Production in Macrophages through Histone Deacetylase 11 by Downregulating MicroRNA-145

(2013) L. Lin et al.   JOURNAL OF IMMUNOLOGY

Identification of Novel MicroRNA Signatures Linked to Experimental Autoimmune Myasthenia Gravis Pathogenesis: Down-Regulated miR-145 Promotes Pathogenetic Th17 Cell Response

(2013) Jiao Wang et al.   Journal of Neuroimmune Pharmacology

Sinomenine Suppresses Osteoclast Formation and Mycobacterium tuberculosis H37Ra-Induced Bone Loss by Modulating RANKL Signaling Pathways

(2013) Xiaojuan Li et al.   PLoS One

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis

(2013) Martina Kutmon et al.   PLoS One

Robust rank aggregation for gene list integration and meta-analysis

(2012) Raivo Kolde et al.   BIOINFORMATICS

Decreased microRNA(miR)-145 and increased miR-224 expression in T cells from patients with systemic lupus erythematosus involved in lupus immunopathogenesis

(2012) M-C. Lu et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Interferon-γ, tumor necrosis factor, and interleukin-18 cooperate to control growth of Mycobacterium tuberculosis in human macrophages

(2012) Cory M. Robinson et al.   CYTOKINE

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Mycobacterium tuberculosis Sonicate-Induced IFNγ, CXCL10 and IL10 can Differentiate Severity in Tuberculosis

(2011) Z. Hasan et al.   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS