Extensive allele mining discovers novel genetic diversity in the loci controlling frost tolerance in barley

The Breeding of Winter-Hardy Malting Barley

(2021) Eric J. Stockinger   Plants-Basel

Segmental duplications are hot spots of copy number variants affecting barley gene content

(2020) Gianluca Bretani et al.   PLANT JOURNAL

Exome sequences and multi‐environment field trials elucidate the genetic basis of adaptation in barley

(2019) Daniela Bustos‐Korts et al.   PLANT JOURNAL

Copy Number Variation in Domestication

(2019) Zoe N. Lye et al.   TRENDS IN PLANT SCIENCE

Influence of CNV on transcript levels of HvCBF genes at Fr-H2 locus revealed by resequencing in resistant barley cv. ‘Nure’ and expression analysis

(2019) Lavinia Mareri et al.   PLANT SCIENCE

Widespread modulation of gene expression by copy number variation in skeletal muscle

(2018) Ludwig Geistlinger et al.   Scientific Reports

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

CBF2A–CBF4B genomic region copy numbers alongside the circadian clock play key regulatory mechanisms driving expression of FR-H2 CBFs

(2017) Taniya Dhillon et al.   PLANT MOLECULAR BIOLOGY

Association between the allele compositions of major plant developmental genes and frost tolerance in barley (Hordeum vulgare L.) germplasm of different origin

(2016) Fulvia Rizza et al.   MOLECULAR BREEDING

Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

(2016) Garrett J. McKinney et al.   Molecular Ecology Resources

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

(2016) Joanne Russell et al.   NATURE GENETICS

Copy number variation at the HvCBF4–HvCBF2 genomic segment is a major component of frost resistance in barley

(2016) Enrico Francia et al.   PLANT MOLECULAR BIOLOGY

Evolution of gene duplication in plants

(2016) Nicholas Panchy et al.   PLANT PHYSIOLOGY

A Cluster of Nucleotide-Binding Site–Leucine-Rich Repeat Genes Resides in a Barley Powdery Mildew Resistance Quantitative Trait Loci on 7HL

(2016) Carlos P. Cantalapiedra et al.   Plant Genome

Exploiting genetic diversity from landraces in wheat breeding for adaptation to climate change

(2015) Marta S. Lopes et al.   JOURNAL OF EXPERIMENTAL BOTANY

Barley: a translational model for adaptation to climate change

(2015) Ian K. Dawson et al.   NEW PHYTOLOGIST

The Relationships between Development and Low Temperature Tolerance in Barley Near Isogenic Lines Differing for Flowering Behavior

(2015) Alfonso Cuesta-Marcos et al.   PLANT AND CELL PHYSIOLOGY

Genomics of crop wild relatives: expanding the gene pool for crop improvement

(2015) Marta Brozynska et al.   PLANT BIOTECHNOLOGY JOURNAL

Structural variations in plant genomes

(2014) R. K. Saxena et al.   Briefings in Functional Genomics

Allelic variation at Fr-H1/Vrn-H1 and Fr-H2 loci is the main determinant of frost tolerance in spring barley

(2014) Alessandro Tondelli et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

The barley Frost resistance-H2 locus

(2014) Marianna Pasquariello et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

PROTEIN DISULFIDE ISOMERASE LIKE 5-1is a susceptibility factor to plant viruses

(2014) Ping Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Copy number and haplotype variation at the VRN-A1 and central FR-A2 loci are associated with frost tolerance in hexaploid wheat

(2014) Jie Zhu et al.   THEORETICAL AND APPLIED GENETICS

The 3,000 rice genomes project

(2014)   GigaScience

Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

(2013) Andrea Visioni et al.   BMC GENOMICS

Transgenic barley lines prove the involvement of TaCBF14 and TaCBF15 in the cold acclimation process and in frost tolerance

(2013) Alexandra Soltész et al.   JOURNAL OF EXPERIMENTAL BOTANY

Barley whole exome capture: a tool for genomic research in the genusHordeumand beyond

(2013) Martin Mascher et al.   PLANT JOURNAL

Hv-CBF2A overexpression in barley accelerates COR gene transcript accumulation and acquisition of freezing tolerance during cold acclimation

(2013) Zoran Jeknić et al.   PLANT MOLECULAR BIOLOGY

Copy number polymorphism in plant genomes

(2013) Agnieszka Żmieńko et al.   THEORETICAL AND APPLIED GENETICS

DELLY: structural variant discovery by integrated paired-end and split-read analysis

(2012) T. Rausch et al.   BIOINFORMATICS

Summarizing and correcting the GC content bias in high-throughput sequencing

(2012) Yuval Benjamini et al.   NUCLEIC ACIDS RESEARCH

Allele Mining in Barley Genetic Resources Reveals Genes of Race-Non-Specific Powdery Mildew Resistance

(2012) Annika Spies et al.   Frontiers in Plant Science

Diversity in the Response to Low Temperature in Representative Barley Genotypes Cultivated in Europe

(2011) F. Rizza et al.   CROP SCIENCE

Allele mining and haplotype discovery in barley candidate genes for drought tolerance

(2011) András Cseri et al.   EUPHYTICA

Crops that feed the world 4. Barley: a resilient crop? Strengths and weaknesses in the context of food security

(2011) Adrian Clive Newton et al.   Food Security

Improvement of stress tolerance of wheat and barley by modulation of expression of DREB/CBF factors

(2010) Sarah Morran et al.   PLANT BIOTECHNOLOGY JOURNAL

Inside the CBF locus in Poaceae

(2010) Alessandro Tondelli et al.   PLANT SCIENCE

CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals

(2010) Andrea K. Knox et al.   THEORETICAL AND APPLIED GENETICS

Regions associated with repression of the barley (Hordeum vulgare) VERNALIZATION1 gene are not required for cold induction

(2009) Megan N. Hemming et al.   MOLECULAR GENETICS AND GENOMICS

Marker-assisted characterization of frost tolerance in barley (Hordeum vulgareL.)

(2009) T. Akar et al.   PLANT BREEDING

Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway

(2008) S. Taketa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA