Comparison of different digestion methods for proteomic analysis of isolated cells and FFPE tissue samples
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparison of different digestion methods for proteomic analysis of isolated cells and FFPE tissue samples
Authors
Keywords
Proteomics, FASP, Pressure-cycling digestion, In-solution digestion, Cellular subpopulations, FFPE tissue Proteomics
Journal
TALANTA
Volume 233, Issue -, Pages 122568
Publisher
Elsevier BV
Online
2021-05-28
DOI
10.1016/j.talanta.2021.122568
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution
- (2020) Paul D. Piehowski et al. Nature Communications
- A streamlined mass spectrometry–based proteomics workflow for large‐scale FFPE tissue analysis
- (2020) Fabian Coscia et al. JOURNAL OF PATHOLOGY
- Accelerated Lysis and Proteolytic Digestion of Biopsy-Level Fresh-Frozen and FFPE Tissue Samples Using Pressure Cycling Technology
- (2020) Huanhuan Gao et al. JOURNAL OF PROTEOME RESEARCH
- Streamlined protocol for deep proteomic profiling of FAC-sorted cells and its application to freshly isolated murine immune cells
- (2019) Samuel A Myers et al. MOLECULAR & CELLULAR PROTEOMICS
- Filter Aided Sample Preparation – A tutorial
- (2019) Jacek R. Wiśniewski ANALYTICA CHIMICA ACTA
- Assessment of protein extraction and digestion efficiency of well-established shotgun protocols for heart proteomics
- (2019) Lucas Rodrigues-Ribeiro et al. ANALYTICAL BIOCHEMISTRY
- High‐throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification
- (2019) Yi Zhu et al. Molecular Oncology
- Open search unveils modification patterns in formalin-fixed, paraffin-embedded thermo HCD and SCIEX TripleTOF shotgun proteomes
- (2019) David L. Tabb et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines
- (2018) Harald Barsnes et al. JOURNAL OF PROTEOME RESEARCH
- An Integrated, High-Throughput Strategy for Multiomic Systems Level Analysis
- (2018) Danielle B. Gutierrez et al. JOURNAL OF PROTEOME RESEARCH
- Evaluation of FASP, SP3, and iST Protocols for Proteomic Sample Preparation in the Low Microgram Range
- (2017) Malte Sielaff et al. JOURNAL OF PROTEOME RESEARCH
- Integral membrane proteins in proteomics. How to break open the black box?
- (2017) O. Vit et al. Journal of Proteomics
- Mild hypothermia provides Treg stability
- (2017) Natalia Marek-Trzonkowska et al. Scientific Reports
- Reproducible Tissue Homogenization and Protein Extraction for Quantitative Proteomics Using MicroPestle-Assisted Pressure-Cycling Technology
- (2016) Shiying Shao et al. JOURNAL OF PROTEOME RESEARCH
- Comparison of multiple protein extraction buffers for GeLC-MS/MS proteomic analysis of liver and colon formalin-fixed, paraffin-embedded tissues
- (2016) Valérie Broeckx et al. Molecular BioSystems
- Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples
- (2016) Geremy Clair et al. Scientific Reports
- Proteomic developments in the analysis of formalin-fixed tissue
- (2015) Ove J.R. Gustafsson et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Proteomic Challenges: Sample Preparation Techniques for Microgram-Quantity Protein Analysis from Biological Samples
- (2015) Peter Feist et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- PeptideShaker enables reanalysis of MS-derived proteomics data sets
- (2015) Marc Vaudel et al. NATURE BIOTECHNOLOGY
- Two methods for proteomic analysis of formalin-fixed, paraffin embedded tissue result in differential protein identification, data quality, and cost
- (2015) Stephen A. Luebker et al. PROTEOMICS
- Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding
- (2015) Ying Zhang et al. PROTEOMICS
- Nano-LC in proteomics: recent advances and approaches
- (2015) Steven Ray Wilson et al. Bioanalysis
- MS-GF+ makes progress towards a universal database search tool for proteomics
- (2014) Sangtae Kim et al. Nature Communications
- Pressure-assisted sample preparation for proteomic analysis
- (2013) Pawel P. Olszowy et al. ANALYTICAL BIOCHEMISTRY
- Quantitative Assessment of In-solution Digestion Efficiency Identifies Optimal Protocols for Unbiased Protein Analysis
- (2013) Ileana R. León et al. MOLECULAR & CELLULAR PROTEOMICS
- Pressure-Assisted Protein Extraction: A Novel Method for Recovering Proteins from Archival Tissue for Proteomic Analysis
- (2012) Carol B. Fowler et al. JOURNAL OF PROTEOME RESEARCH
- A cross-platform toolkit for mass spectrometry and proteomics
- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers
- (2011) Jacek R. Wiśniewski et al. JOURNAL OF PROTEOME RESEARCH
- Comparative Proteomics of Colon Cancer Stem Cells and Differentiated Tumor Cells Identifies BIRC6 as a Potential Therapeutic Target
- (2011) WJ Van Houdt et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells
- (2010) Christian A. Luber et al. IMMUNITY
- Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome
- (2009) Jacek R. Wiśniewski et al. JOURNAL OF PROTEOME RESEARCH
- Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis
- (2009) Robert W. Sprung et al. MOLECULAR & CELLULAR PROTEOMICS
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
- Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
- (2008) Judy Toews et al. ANALYTICA CHIMICA ACTA
- Application of Pressurized Solvents for Ultrafast Trypsin Hydrolysis in Proteomics: Proteomics on the Fly
- (2008) Daniel López-Ferrer et al. JOURNAL OF PROTEOME RESEARCH
- Biomarker Discovery in Low-Grade Breast Cancer Using Isobaric Stable Isotope Tags and Two-Dimensional Liquid Chromatography-Tandem Mass Spectrometry (iTRAQ-2DLC-MS/MS) Based Quantitative Proteomic Analysis
- (2008) Pavel Bouchal et al. JOURNAL OF PROTEOME RESEARCH
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now