Soil microbial community response to winter climate change is phylogenetically conserved and highly resilient in a cool-temperate forest

Climate change alters temporal dynamics of alpine soil microbial functioning and biogeochemical cycling via earlier snowmelt

(2021) Arthur A. D. Broadbent et al.   ISME Journal

Timing of forest fine root production advances with reduced snow cover in northern Japan: implications for climate-induced change in understory and overstory competition

(2021) Karibu Fukuzawa et al.   OECOLOGIA

Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

(2020) Ching Jian et al.   PLoS One

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil

(2020) Steven J. Blazewicz et al.   ISME Journal

Phylogenetic conservation of soil bacterial responses to simulated global changes

(2020) Kazuo Isobe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Soil Microbes Trade-Off Biogeochemical Cycling for Stress Tolerance Traits in Response to Year-Round Climate Change

(2020) Maria O. Garcia et al.   Frontiers in Microbiology

The Snowmelt Niche Differentiates Three Microbial Life Strategies That Influence Soil Nitrogen Availability During and After Winter

(2020) Patrick O. Sorensen et al.   Frontiers in Microbiology

Labile carbon limits late winter microbial activity near Arctic treeline

(2020) Patrick F. Sullivan et al.   Nature Communications

Analysis of microbial compositions: a review of normalization and differential abundance analysis

(2020) Huang Lin et al.   npj Biofilms and Microbiomes

The effect of a freeze–thaw cycle on dissolved nitrogen dynamics and its relation to dissolved organic matter and soil microbial biomass in the soil of a northern hardwood forest

(2019) Tsunehiro Watanabe et al.   BIOGEOCHEMISTRY

Reduced snow cover changes nitrogen use in canopy and understory vegetation during the subsequent growing season

(2019) Ryunosuke Tateno et al.   PLANT AND SOIL

Predictive genomic traits for bacterial growth in culture versus actual growth in soil

(2019) Junhui Li et al.   ISME Journal

Roots Mediate the Effects of Snowpack Decline on Soil Bacteria, Fungi, and Nitrogen Cycling in a Northern Hardwood Forest

(2019) Patrick O. Sorensen et al.   Frontiers in Microbiology

Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents

(2019) Kazuo Isobe et al.   Nature Communications

Evolutionary history constrains microbial traits across environmental variation

(2019) Ember M. Morrissey et al.   Nature Ecology & Evolution

Consequences of microbial diversity in forest nitrogen cycling: diverse ammonifiers and specialized ammonia oxidizers

(2019) Kazuo Isobe et al.   ISME Journal

Effect of snowpack on the soil bacteria of alpine meadows in the Qinghai-Tibetan Plateau of China

(2018) L.J. Ade et al.   CATENA

Taxonomic patterns in the nitrogen assimilation of soil prokaryotes

(2018) Ember M. Morrissey et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term warming rather than grazing significantly changed total and active soil procaryotic community structures

(2018) Rongxiao Che et al.   GEODERMA

Vertical variation of a black soil's properties in response to freeze-thaw cycles and its links to shift of microbial community structure

(2018) Ziming Han et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Winter soil freeze-thaw cycles lead to reductions in soil microbial biomass and activity not compensated for by soil warming

(2018) Patrick O. Sorensen et al.   SOIL BIOLOGY & BIOCHEMISTRY

High soil microbial activity in the winter season enhances nitrogen cycling in a cool-temperate deciduous forest

(2018) Kazuo Isobe et al.   SOIL BIOLOGY & BIOCHEMISTRY

Estimating taxon-specific population dynamics in diverse microbial communities

(2018) Benjamin J. Koch et al.   Ecosphere

Response of Nitrifier and Denitrifier Abundance and Microbial Community Structure to Experimental Warming in an Agricultural Ecosystem

(2018) Tatoba R. Waghmode et al.   Frontiers in Microbiology

Climate Change Across Seasons Experiment (CCASE): A new method for simulating future climate in seasonally snow-covered ecosystems

(2017) Pamela H. Templer et al.   PLoS One

Winter ecology of a subalpine grassland: Effects of snow removal on soil respiration, microbial structure and function

(2017) Konstantin Gavazov et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Impact of winter climate change on nitrogen biogeochemistry in forest ecosystems: A synthesis from Japanese case studies

(2016) Hideaki Shibata   ECOLOGICAL INDICATORS

Reduced snow cover alters root-microbe interactions and decreases nitrification rates in a northern hardwood forest

(2016) Patrick O. Sorensen et al.   ECOLOGY

Phylogenetic organization of bacterial activity

(2016) Ember M Morrissey et al.   ISME Journal

Quantitative Microbial Ecology through Stable Isotope Probing

(2015) Bruce A. Hungate et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Higher diversity and abundance of denitrifying microorganisms in environments than considered previously

(2015) Wei Wei et al.   ISME Journal

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Long-term forest soil warming alters microbial communities in temperate forest soils

(2015) Kristen M. DeAngelis et al.   Frontiers in Microbiology

Snow removal alters soil microbial biomass and enzyme activity in a Tibetan alpine forest

(2014) Bo Tan et al.   APPLIED SOIL ECOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Biogeochemical nitrogen properties of forest soils in the Japanese archipelago

(2014) Rieko Urakawa et al.   ECOLOGICAL RESEARCH

Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter

(2014) Céline Mouginot et al.   SOIL BIOLOGY & BIOCHEMISTRY

Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling

(2014) Maria Mooshammer et al.   Nature Communications

Seasonality of factors controlling N mineralization rates among slope positions and aspects in cool-temperate deciduous natural forests and larch plantations

(2013) Takuo Hishi et al.   BIOLOGY AND FERTILITY OF SOILS

Winter climate change in plant–soil systems: summary of recent findings and future perspectives

(2013) Kobayashi Makoto et al.   ECOLOGICAL RESEARCH

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes

(2013) Amy E Zimmerman et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial abundance and composition influence litter decomposition response to environmental change

(2012) Steven D. Allison et al.   ECOLOGY

High abundance of ammonia-oxidizing archaea in acidified subtropical forest soils in southern China after long-term N deposition

(2012) Kazuo Isobe et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities

(2012) Juan M. Gonzalez et al.   PLoS One

Sensitivity of soil respiration and microbial communities to altered snowfall

(2012) Zachary T. Aanderud et al.   SOIL BIOLOGY & BIOCHEMISTRY

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Microbial respiration in ice at subzero temperatures (−4°C to −33°C)

(2011) Corien Bakermans et al.   Environmental Microbiology Reports

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil

(2010) Christina Kaiser et al.   NEW PHYTOLOGIST

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of snow cover on soil freezing, water movement, and snowmelt infiltration: A paired plot experiment

(2010) Yukiyoshi Iwata et al.   WATER RESOURCES RESEARCH

The trade-off between growth rate and yield in microbial communities and the consequences for under-snow soil respiration in a high elevation coniferous forest

(2008) David A. Lipson et al.   BIOGEOCHEMISTRY

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

The Response of Northern Hemisphere Snow Cover to a Changing Climate*

(2008) Ross D. Brown et al.   JOURNAL OF CLIMATE

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA