Composition change and decreased diversity of microbial eukaryotes in the coastal upwelling waters of South China Sea

Reconciling the Size‐Dependence of Marine Particle Sinking Speed

(2021) B. B. Cael et al.   GEOPHYSICAL RESEARCH LETTERS

Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles

(2021) Robert H. Lampe et al.   mSystems

Diversity and potential function of bacterial communities in different upwelling systems

(2020) Fulin Sun et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Environmental Factors and Pollution Stresses Select Bacterial Populations in Association With Protists

(2020) Songbao Zou et al.   Frontiers in Marine Science

Distinct oxygen environments shape picoeukaryote assemblages thriving oxygen minimum zone waters off central Chile

(2020) Rodrigo De la Iglesia et al.   JOURNAL OF PLANKTON RESEARCH

What controls microzooplankton biomass and herbivory rate across marginal seas of China?

(2020) Kailin Liu et al.   LIMNOLOGY AND OCEANOGRAPHY

Disentangling the structure and function of mycoplankton communities in the context of marine environmental heterogeneity

(2020) Kalyani Sen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Spatiotemporal Distribution of Key Pelagic Microbes in a Seasonal Oxygen-Deficient Coastal Upwelling System of the Eastern South Pacific Ocean

(2020) Verónica Molina et al.   Frontiers in Marine Science

Drivers of reef fish assemblages in an upwelling region from the Eastern Tropical Pacific Ocean

(2020) Marius H. Eisele et al.   JOURNAL OF FISH BIOLOGY

Tracing the upwelling process in the northern Benguela upwelling system (nBUS) by 129I

(2020) José María López-Gutiérrez et al.   CHEMOSPHERE

Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem

(2019) Yoko Hamamoto et al.   PLoS One

Differential feeding by common heterotrophic protists on four Scrippsiella species of similar size

(2019) So Jin Kim et al.   JOURNAL OF PHYCOLOGY

Microbial communities across nearshore to offshore coastal transects are primarily shaped by distance and temperature

(2019) Zhao Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Eukaryotic influence on the oceanic biological carbon pump in the Scotia Sea as revealed by 18S rRNA gene sequencing of suspended and sinking particles

(2019) Manon T. Duret et al.   LIMNOLOGY AND OCEANOGRAPHY

Oxygen modulates bacterial community composition in the coastal upwelling waters off central Chile

(2018) Montserrat Aldunate et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

High phylogenetic diversity and abundance pattern of labyrinthulomycete protists in the coastal waters of the Bohai Sea

(2018) Ningdong Xie et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton Community Structure in 2011-2013 Compared to the Extratropical Warming Event of 2014-2015

(2018) X. Du et al.   GEOPHYSICAL RESEARCH LETTERS

Flow Cytometry for Rapid Enumeration and Biomass Quantification of Thraustochytrids in Coastal Seawaters

(2018) Yingbo Duan et al.   MICROBES AND ENVIRONMENTS

High resolution time series reveals cohesive but short-lived communities in coastal plankton

(2018) Antonio M. Martin-Platero et al.   Nature Communications

Upwelling induced changes in the abundance and community structure of archaea and bacteria in a recurring mud bank along the southwest coast of India

(2018) Abdulaziz Anas et al.   Regional Studies in Marine Science

Surface mesozooplankton assemblages in a tropical coastal upwelling ecosystem: Southeastern Arabian Sea

(2018) P. Ezhilarasan et al.   CONTINENTAL SHELF RESEARCH

Seasonal succession of small planktonic eukaryotes inhabiting surface waters of a coastal upwelling system

(2018) Marta Hernández-Ruiz et al.   ENVIRONMENTAL MICROBIOLOGY

Diatom populations in an upwelling environment decrease silica content to avoid growth limitation

(2018) Heather M. McNair et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular Detection and Spatiotemporal Characterization of Labyrinthulomycete Protist Diversity in the Coastal Waters Along the Pearl River Delta

(2018) Mohan Bai et al.   MICROBIAL ECOLOGY

Spatial Variability of Picoeukaryotic Communities in the Mariana Trench

(2018) Hongmei Jing et al.   Scientific Reports

Nitrogen and Isotope Flows Through the Costa Rica Dome Upwelling Ecosystem: The Crucial Mesozooplankton Role in Export Flux

(2018) Michael R. Stukel et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Coastal Upwelling Revisited: Ekman, Bakun, and Improved Upwelling Indices for the U.S. West Coast

(2018) Michael G. Jacox et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Degradation of Distillery Lees (Shochu kasu) by Cellulase-Producing Thraustochytrids

(2017) Yousuke Taoka et al.   Journal of Oleo Science

Microplankton biomass and diversity in the Vietnamese upwelling area during SW monsoon under normal conditions and after an ENSO event

(2017) Natalie Loick-Wilde et al.   PROGRESS IN OCEANOGRAPHY

Distinct Seasonal Patterns of Bacterioplankton Abundance and Dominance of Phyla α-Proteobacteria and Cyanobacteria in Qinhuangdao Coastal Waters Off the Bohai Sea

(2017) Yaodong He et al.   Frontiers in Microbiology

Ingestion rate and grazing impact by the mixotrophic ciliate Mesodinium rubrum on natural populations of marine heterotrophic bacteria in the coastal waters of Korea

(2017) Kyeong Ah Seong et al.   ALGAE

Comparison of copepod communities during upwelling and non-upwelling in the summers from 1992 to 2010 in Tosa Bay, western Japan

(2017) Yuuichi Hirota et al.   Plankton & Benthos Research

Fungal parasites infect marine diatoms in the upwelling ecosystem of the Humboldt current system off central Chile

(2016) Marcelo H. Gutiérrez et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of temperature variability on community structure in a natural microbial food web

(2016) Axel Zander et al.   GLOBAL CHANGE BIOLOGY

Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow

(2016) Alexander B Bochdansky et al.   ISME Journal

Upwelling areas as climate change refugia for the distribution and genetic diversity of a marine macroalga

(2016) Carla R. Lourenço et al.   JOURNAL OF BIOGEOGRAPHY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Ocean temperatures chronicle the ongoing warming of Earth

(2016) Susan Wijffels et al.   Nature Climate Change

Seasonal dynamics of culturable thraustochytrids (Labyrinthulomycetes, Stramenopiles) in estuarine and coastal waters

(2015) M Ueda et al.   AQUATIC MICROBIAL ECOLOGY

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Intra-seasonal variation of upwelling and its effects on copepod community structure off central/southern Chile (2002–2009)

(2015) Carolina E. González et al.   HYDROBIOLOGIA

Estimating Protistan Diversity Using High-Throughput Sequencing

(2015) Sarah K. Hu et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Differentiating the role of different-sized microorganisms in peptide decomposition during incubations using size-fractioned coastal seawater

(2015) Shuting Liu et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Interactions between trophic levels in upwelling and non-upwelling regions during summer monsoon

(2015) A. Malik et al.   JOURNAL OF SEA RESEARCH

Interannual variations in phytoplankton community structure in the northern California Current during the upwelling seasons of 2001-2010

(2015) X Du et al.   MARINE ECOLOGY PROGRESS SERIES

Intensification and spatial homogenization of coastal upwelling under climate change

(2015) Daiwei Wang et al.   NATURE

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Interannual variations in phytoplankton community structure in the northern California Current during the upwelling seasons of 2001-2010

(2015) X Du et al.   MARINE ECOLOGY PROGRESS SERIES

Global abundance of planktonic heterotrophic protists in the deep ocean

(2014) Massimo C Pernice et al.   ISME Journal

Size-based analysis of a zooplankton community under the influence of the Pearl River plume and coastal upwelling in the northeastern South China Sea

(2014) Linbin Zhou et al.   Marine Biology Research

Seasonal and interannual variability of the calanoid copepod community structure in shelf waters of the Eastern Tropical Pacific

(2014) ER Kozak et al.   MARINE ECOLOGY PROGRESS SERIES

Vibrio diversity and dynamics in the Monterey Bay upwelling region

(2014) Sarah Mansergh et al.   Frontiers in Microbiology

Spring phytoplankton communities shaped by interannual weather variability and dispersal limitation: Mechanisms of climate change effects on key coastal primary producers

(2013) Riina Klais et al.   LIMNOLOGY AND OCEANOGRAPHY

Role of Upwelling on Larval Dispersal and Productivity of Gooseneck Barnacle Populations in the Cantabrian Sea: Management Implications

(2013) Antonella Rivera et al.   PLoS One

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

(2012) Lisa Zeigler Allen et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

A Global Pattern of Thermal Adaptation in Marine Phytoplankton

(2012) M. K. Thomas et al.   SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

A local upwelling controls viral and microbial community structure in South Australian continental shelf waters

(2011) James S. Paterson et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Decadal-Scale Changes of Dinoflagellates and Diatoms in the Anomalous Baltic Sea Spring Bloom

(2011) Riina Klais et al.   PLoS One

Alkaline lipase activity from the marine protists, thraustochytrids

(2011) R. Kanchana et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Microbial dynamics in an oligotrophic bay of the western subtropical Pacific: Impact of short-term heavy freshwater runoff and upwelling

(2010) An-Yi Tsai et al.   JOURNAL OF OCEANOGRAPHY

Upwelling areas do not guarantee refuge for coral reefs in a warming ocean

(2010) I Chollett et al.   MARINE ECOLOGY PROGRESS SERIES

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Growth, feeding and ecological roles of the mixotrophic and heterotrophic dinoflagellates in marine planktonic food webs

(2010) Hae Jin Jeong et al.   Ocean Science Journal

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Dinoflagellate cysts in recent sediments from two semi-enclosed areas of the Western Mediterranean Sea subject to high human impact

(2009) Cecilia Teodora Satta et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Abundance of thraustochytrids and bacteria in the equatorial Indian Ocean, in relation to transparent exopolymeric particles (TEPs)

(2008) Varada Damare et al.   FEMS MICROBIOLOGY ECOLOGY

Effects of temperature on growth rate and gross growth efficiency of an Antarctic bacterivorous protist

(2008) Julie M Rose et al.   ISME Journal

Zooplankton community structure across an eddy-generated upwelling band close to a tropical bay-mangrove ecosystem

(2008) M. Rakhesh et al.   MARINE BIOLOGY

Zooplankton and forage fish species off Peru: Large-scale bottom-up forcing and local-scale depletion

(2008) Patricia Ayón et al.   PROGRESS IN OCEANOGRAPHY