Eukaryotic influence on the oceanic biological carbon pump in the Scotia Sea as revealed by 18S rRNA gene sequencing of suspended and sinking particles

Fungi in aquatic ecosystems

(2019) Hans-Peter Grossart et al.   NATURE REVIEWS MICROBIOLOGY

The Significance of Giant Phaeodarians (Rhizaria) to Biogenic Silica Export in the California Current Ecosystem

(2018) Tristan Biard et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Short-term dynamics and interactions of marine protist communities during the spring–summer transition

(2018) Lyria Berdjeb et al.   ISME Journal

Large Phaeodaria in the twilight zone: Their role in the carbon cycle

(2018) Michael R. Stukel et al.   LIMNOLOGY AND OCEANOGRAPHY

Endemicity and climatic niche differentiation in three marine ciliated protists

(2018) Richard A. J. Williams et al.   LIMNOLOGY AND OCEANOGRAPHY

Evaluation of marine zooplankton community structure through environmental DNA metabarcoding

(2018) Anni Djurhuus et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export

(2018) Karine Leblanc et al.   Nature Communications

Vertical distribution and active carbon transport by pelagic decapods in the North Pacific Subtropical Gyre

(2018) Evgeny A Pakhomov et al.   ICES JOURNAL OF MARINE SCIENCE

Zooplankton production and carbon export flux in the western Alboran Sea gyre (SW Mediterranean)

(2018) Lidia Yebra et al.   PROGRESS IN OCEANOGRAPHY

Prokaryotic Niche Partitioning Between Suspended and Sinking Marine Particles

(2018) Manon T Duret et al.   Environmental Microbiology Reports

High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding

(2018) Andres Gutierrez-Rodriguez et al.   ISME Journal

Slow-sinking particulate organic carbon in the Atlantic Ocean: Magnitude, flux, and potential controls

(2017) Chelsey A. Baker et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Particle flux in the oceans: Challenging the steady state assumption

(2017) Sarah L. C. Giering et al.   GLOBAL BIOGEOCHEMICAL CYCLES

An exploratory study of heterotrophic protists of the mesopelagic Mediterranean Sea

(2017) John R Dolan et al.   ICES JOURNAL OF MARINE SCIENCE

Biogeography and diversity of Collodaria (Radiolaria) in the global ocean

(2017) Tristan Biard et al.   ISME Journal

Patterns of bacterial diversity in the marine planktonic particulate matter continuum

(2017) Mireia Mestre et al.   ISME Journal

Stable isotope analysis of micronekton around Hawaii reveals suspended particles are an important nutritional source in the lower mesopelagic and upper bathypelagic zones

(2017) Kristen Gloeckler et al.   LIMNOLOGY AND OCEANOGRAPHY

Zooplankton grazing and egestion shifts particle size distribution in natural communities

(2017) K Stamieszkin et al.   MARINE ECOLOGY PROGRESS SERIES

Influence of diatom diversity on the ocean biological carbon pump

(2017) Paul Tréguer et al.   Nature Geoscience

Sinking towards destiny: High throughput measurement of phytoplankton sinking rates through time-resolved fluorescence plate spectroscopy

(2017) Catherine C. Bannon et al.   PLoS One

Transparent exopolymer particles: Effects on carbon cycling in the ocean

(2017) Xavier Mari et al.   PROGRESS IN OCEANOGRAPHY

A Pelagic Microbiome (Viruses to Protists) from a Small Cup of Seawater

(2017) Flavia Flaviani et al.   Viruses-Basel

Acknowledging and incorporating mixed nutrition into aquatic protistan ecology, finally

(2017) David A. Caron   Environmental Microbiology Reports

Remineralization of particulate organic carbon in an ocean oxygen minimum zone

(2017) E. L. Cavan et al.   Nature Communications

Zooplankton grazing and egestion shifts particle size distribution in natural communities

(2017) K Stamieszkin et al.   MARINE ECOLOGY PROGRESS SERIES

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding

(2017) Elizabeth A. Andruszkiewicz et al.   PLoS One

Marine protist associations and environmental impacts across trophic levels in the twilight zone and below

(2016) VP Edgcomb   CURRENT OPINION IN MICROBIOLOGY

Strong contribution of diatom resting spores to deep-sea carbon transfer in naturally iron-fertilized waters downstream of South Georgia

(2016) M. Rembauville et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance

(2016) Joe D Taylor et al.   ISME Journal

Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow

(2016) Alexander B Bochdansky et al.   ISME Journal

Unexpected prevalence of parasite 18S rDNA sequences in winter among Antarctic marine protists

(2016) Alison C. Cleary et al.   JOURNAL OF PLANKTON RESEARCH

Southern Ocean phytoplankton physiology in a changing climate

(2016) Katherina Petrou et al.   JOURNAL OF PLANT PHYSIOLOGY

Is there a difference of temperature sensitivity between marine phytoplankton and heterotrophs?

(2016) Bingzhang Chen et al.   LIMNOLOGY AND OCEANOGRAPHY

The role of particle associated microbes in remineralization of fecal pellets in the upper mesopelagic of the Scotia Sea, Antarctica

(2016) Anna Belcher et al.   LIMNOLOGY AND OCEANOGRAPHY

Unexpected biodiversity of ciliates in marine samples from below the photic zone

(2016) Jean-David Grattepanche et al.   MOLECULAR ECOLOGY

In situ imaging reveals the biomass of giant protists in the global ocean

(2016) Tristan Biard et al.   NATURE

Biogeography of Radiolaria Polycystina (Protista) in the World Ocean

(2016) Demetrio Boltovskoy et al.   PROGRESS IN OCEANOGRAPHY

Water mass dynamics shape Ross Sea protist communities in mesopelagic and bathypelagic layers

(2016) Luca Zoccarato et al.   PROGRESS IN OCEANOGRAPHY

Exchange between suspended and sinking particles in the northwest Mediterranean as inferred from the organic composition of in situ pump and sediment trap samples

(2016) Lynn Abramson et al.   LIMNOLOGY AND OCEANOGRAPHY

Insights into Particle Cycling from Thorium and Particle Data

(2015) Phoebe J. Lam et al.   Annual Review of Marine Science

Vertical variation of pelagic ciliate communities in the western Arctic Ocean

(2015) Yong Jiang et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Attenuation of particulate organic carbon flux in the Scotia Sea, Southern Ocean, is controlled by zooplankton fecal pellets

(2015) E. L. Cavan et al.   GEOPHYSICAL RESEARCH LETTERS

The multiple fates of sinking particles in the North Atlantic Ocean

(2015) James R. Collins et al.   GLOBAL BIOGEOCHEMICAL CYCLES

The relation of mixed-layer net community production to phytoplankton community composition in the Southern Ocean

(2015) Nicolas Cassar et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

The oceanographic toolbox for the collection of sinking and suspended marine particles

(2015) Andrew M.P. McDonnell et al.   PROGRESS IN OCEANOGRAPHY

Zooplankton fecal pellets, marine snow, phytodetritus and the ocean’s biological pump

(2015) Jefferson T. Turner   PROGRESS IN OCEANOGRAPHY

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem

(2015) Susana Rodríguez-Marconi et al.   PLoS One

Microbial gardening in the ocean's twilight zone: Detritivorous metazoans benefit from fragmenting, rather than ingesting, sinking detritus

(2014) Daniel J. Mayor et al.   BIOESSAYS

Carbon export by small particles in the Norwegian Sea

(2014) Giorgio Dall'Olmo et al.   GEOPHYSICAL RESEARCH LETTERS

Global abundance of planktonic heterotrophic protists in the deep ocean

(2014) Massimo C Pernice et al.   ISME Journal

Reconciliation of the carbon budget in the ocean’s twilight zone

(2014) Sarah L. C. Giering et al.   NATURE

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

(2014) Kenan Hadziavdic et al.   PLoS One

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile

(2014) Darren J. Parris et al.   Frontiers in Microbiology

Microzooplankton grazing along the Western Antarctic Peninsula

(2013) LM Garzio et al.   AQUATIC MICROBIAL ECOLOGY

Diversity and distribution of microbial eukaryotes in the deep tropical and subtropical North Atlantic Ocean

(2013) Danielle Morgan-Smith et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Impact of protist grazing on a key bacterial group for biogeochemical cycling in Baltic Sea pelagic oxic/anoxic interfaces

(2013) Ruth Anderson et al.   ENVIRONMENTAL MICROBIOLOGY

Microzooplankton grazing in the oceans: impacts, data variability, knowledge gaps and future directions

(2013) Claire Schmoker et al.   JOURNAL OF PLANKTON RESEARCH

Microbial control of the dark end of the biological pump

(2013) Gerhard J. Herndl et al.   Nature Geoscience

General Patterns of Diversity in Major Marine Microeukaryote Lineages

(2013) Massimo C. Pernice et al.   PLoS One

Diversity, Ecology and Biogeochemistry of Cyst-Forming Acantharia (Radiolaria) in the Oceans

(2013) Johan Decelle et al.   PLoS One

Extremely High Copy Numbers and Polymorphisms of the rDNA Operon Estimated from Single Cell Analysis of Oligotrich and Peritrich Ciliates

(2013) Jun Gong et al.   PROTIST

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

(2013) Bibiana G. Crespo et al.   MicrobiologyOpen

Ross Sea deep-ocean and epipelagic microzooplankton during the summer-autumn transition period

(2012) KA Safi et al.   AQUATIC MICROBIAL ECOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Diversity and distribution of fungal communities in lakes of Antarctica

(2012) Vívian N. Gonçalves et al.   FEMS MICROBIOLOGY ECOLOGY

The relative contribution of fast and slow sinking particles to ocean carbon export

(2012) J. S. Riley et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Effect of oxygen minimum zone formation on communities of marine protists

(2012) William Orsi et al.   ISME Journal

Mesoscale distribution of protozooplankton communities and their herbivory in the western Scotia Sea of the Southern Ocean during the austral spring

(2012) Eun Jin Yang et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Misuse of the phytoplankton–zooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types

(2012) Kevin J. Flynn et al.   JOURNAL OF PLANKTON RESEARCH

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

An original mode of symbiosis in open ocean plankton

(2012) J. Decelle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph

(2012) Mario López-Pérez et al.   Scientific Reports

The Parasitic Dinoflagellates Blastodinium spp. Inhabiting the Gut of Marine, Planktonic Copepods: Morphology, Ecology, and Unrecognized Species Diversity

(2012) Alf Skovgaard et al.   Frontiers in Microbiology

Act together—implications of symbioses in aquatic ciliates

(2012) Claudia Dziallas et al.   Frontiers in Microbiology

Marine Protistan Diversity

(2011) David A. Caron et al.   Annual Review of Marine Science

Controls on mesopelagic particle fluxes in the Sub-Antarctic and Polar Frontal Zones in the Southern Ocean south of Australia in summer—Perspectives from free-drifting sediment traps

(2011) Friederike Ebersbach et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Regional and seasonal differences in microplankton biomass, productivity, and structure across the Scotia Sea: Implications for the export of biogenic carbon

(2011) Rebecca E. Korb et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

(2011) Virginia Edgcomb et al.   ISME Journal

Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic

(2011) Federico Baltar et al.   LIMNOLOGY AND OCEANOGRAPHY

Shedding light on processes that control particle export and flux attenuation in the twilight zone of the open ocean

(2011) Ken O. Buesseler et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Radiolaria: achievements and unresolved issues: taxonomy and cytology

(2011) Noritoshi Suzuki et al.   Plankton & Benthos Research

Ecology of Gymnodinium aureolum. I. Feeding in western Korean waters

(2010) HJ Jeong et al.   AQUATIC MICROBIAL ECOLOGY

Interannual variability in vertical export in the Ross Sea: Magnitude, composition, and environmental correlates

(2010) Walker O. Smith et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats

(2010) Anne-Laure Sauvadet et al.   ENVIRONMENTAL MICROBIOLOGY

Significance of non-sinking particulate organic carbon and dark CO2fixation to heterotrophic carbon demand in the mesopelagic northeast Atlantic

(2010) Federico Baltar et al.   GEOPHYSICAL RESEARCH LETTERS

Vitamin B12and cobalt cycling among diatoms and bacteria in Antarctic sea ice microbial communities

(2010) Gordon T. Taylor et al.   LIMNOLOGY AND OCEANOGRAPHY

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Ballast, sinking velocity, and apparent diffusivity within marine snow and zooplankton fecal pellets: Implications for substrate turnover by attached bacteria

(2010) Helle Ploug et al.   LIMNOLOGY AND OCEANOGRAPHY

The role of fungi in processing marine organic matter in the upwelling ecosystem off Chile

(2010) M. H. Gutiérrez et al.   MARINE BIOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of macroscopic particles in deep-sea oxygen consumption

(2010) A. B. Bochdansky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Life cycle and molecular phylogeny of the dinoflagellates Chytriodinium and Dissodinium, ectoparasites of copepod eggs

(2009) Fernando Gómez et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Radiolaria: Major exporters of organic carbon to the deep ocean

(2009) R. S. Lampitt et al.   GLOBAL BIOGEOCHEMICAL CYCLES

MOLECULAR PHYLOGENY OF SELECTED SPECIES OF THE ORDER DINOPHYSIALES (DINOPHYCEAE)-TESTING THE HYPOTHESIS OF A DINOPHYSIOID RADIATION

(2009) Maria Hastrup Jensen et al.   JOURNAL OF PHYCOLOGY

The impact of remineralization depth on the air–sea carbon balance

(2009) Eun Young Kwon et al.   Nature Geoscience

The role of the chaetognath Sagitta gazellae in the vertical carbon flux of the Southern Ocean

(2009) Ricardo Giesecke et al.   POLAR BIOLOGY

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in fecal pellet characteristics with depth as indicators of zooplankton repackaging of particles in the mesopelagic zone of the subtropical and subarctic North Pacific Ocean

(2008) Stephanie E. Wilson et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach

(2008) Manon Viprey et al.   ENVIRONMENTAL MICROBIOLOGY

Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)

(2008) L. Guillou et al.   ENVIRONMENTAL MICROBIOLOGY

Degradation of copepod fecal pellets: key role of protozooplankton

(2008) LK Poulsen et al.   MARINE ECOLOGY PROGRESS SERIES

Iron, silicate, and light co-limitation of three Southern Ocean diatom species

(2008) L. J. Hoffmann et al.   POLAR BIOLOGY