Natural history–guided omics reveals plant defensive chemistry against leafhopper pests

Domestication of Crop Metabolomes: Desired and Unintended Consequences

(2021) Saleh Alseekh et al.   TRENDS IN PLANT SCIENCE

Next-Generation Mass Spectrometry Metabolomics Revives the Functional Analysis of Plant Metabolic Diversity

(2021) Dapeng Li et al.   Annual Review of Plant Biology

Substrate specificity of polyphenol oxidase

(2020) Mark-Anthony McLarin et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

The chloroalkaloid (−)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants

(2020) Colin Y. Kim et al.   Nature Communications

Biosynthesis and metabolic actions of simple phenolic acids in plants

(2020) Rogério Marchiosi et al.   PHYTOCHEMISTRY REVIEWS

Information theory tests critical predictions of plant defense theory for specialized metabolism

(2020) Dapeng Li et al.   Science Advances

Analysis of wild tomato introgression lines elucidates the genetic basis of transcriptome and metabolome variation underlying fruit traits and pathogen response

(2020) Jędrzej Szymański et al.   NATURE GENETICS

Using natural variation to achieve a whole‐plant functional understanding of the responses mediated by jasmonate signaling

(2019) Rishav Ray et al.   PLANT JOURNAL

An unbiased approach elucidates variation in (S)-(+)-linalool, a context-specific mediator of a tri-trophic interaction in wild tobacco

(2019) Jun He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation of a bHLH transcription factor allowed almond domestication

(2019) R. Sánchez-Pérez et al.   SCIENCE

The leafcutter bee, Megachile rotundata, is more sensitive to N-cyanoamidine neonicotinoid and butenolide insecticides than other managed bees

(2019) Angela Hayward et al.   Nature Ecology & Evolution

Plant Secondary Metabolite Diversity and Species Interactions

(2018) André Kessler et al.   Annual Review of Ecology Evolution and Systematics

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Noncatalytic chalcone isomerase-fold proteins inHumulus lupulusare auxiliary components in prenylated flavonoid biosynthesis

(2018) Zhaonan Ban et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antifungal Polyamides of Hydroxycinnamic Acids from Sunflower Bee Pollen

(2018) Jan Kyselka et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Herbivory elicits changes in green leaf volatile production via jasmonate signaling and the circadian clock

(2018) Youngsung Joo et al.   PLANT CELL AND ENVIRONMENT

NaMYB8 regulates distinct, optimally distributed herbivore defense traits

(2017) Martin Schäfer et al.   Journal of Integrative Plant Biology

A translational synthetic biology platform for rapid access to gram-scale quantities of novel drug-like molecules

(2017) James Reed et al.   METABOLIC ENGINEERING

Regulation of growth-defense balance by the JASMONATE ZIM-DOMAIN (JAZ)-MYC transcriptional module

(2017) Ian T. Major et al.   NEW PHYTOLOGIST

Entire Photodamaged Chloroplasts Are Transported to the Central Vacuole by Autophagy

(2017) Masanori Izumi et al.   PLANT CELL

Argonaute 8 (AGO8) mediates the elicitation of primary defense against herbivory

(2017) Maitree Pradhan et al.   PLANT PHYSIOLOGY

Wild tobacco genomes reveal the evolution of nicotine biosynthesis

(2017) Shuqing Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flower-specific jasmonate signaling regulates constitutive floral defenses in wild tobacco

(2017) Ran Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Redundancy and specificity in jasmonate signalling

(2016) Andrea Chini et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Illuminating a plant’s tissue-specific metabolic diversity using computational metabolomics and information theory

(2016) Dapeng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of a dynamic metabolon producing the defense compound dhurrin in sorghum

(2016) Tomas Laursen et al.   SCIENCE

A reference gene set for chemosensory receptor genes of Manduca sexta

(2015) Christopher Koenig et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Polyphenol oxidase in leaves: is there any significance to the chloroplastic localization?

(2015) Tinne Boeckx et al.   JOURNAL OF EXPERIMENTAL BOTANY

A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence

(2015) Jakub Rajniak et al.   NATURE

Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis

(2015) Dapeng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping

(2015) Rakesh Santhanam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Six enzymes from mayapple that complete the biosynthetic pathway to the etoposide aglycone

(2015) Warren Lau et al.   SCIENCE

A robust, simple, high-throughput technique for time-resolved plant volatile analysis in field experiments

(2014) Mario Kallenbach et al.   PLANT JOURNAL

Functional Convergence of Oxylipin and Abscisic Acid Pathways Controls Stomatal Closure in Response to Drought

(2014) T. Savchenko et al.   PLANT PHYSIOLOGY

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

NaJAZh Regulates a Subset of Defense Responses against Herbivores and Spontaneous Leaf Necrosis in Nicotiana attenuata Plants

(2012) Y. Oh et al.   PLANT PHYSIOLOGY

Empoasca leafhoppers attack wild tobacco plants in a jasmonate-dependent manner and identify jasmonate mutants in natural populations

(2012) M. Kallenbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HopAS1 recognition significantly contributes to Arabidopsis nonhost resistance to Pseudomonas syringae pathogens

(2011) Kee Hoon Sohn et al.   NEW PHYTOLOGIST

MYB8 Controls Inducible Phenolamide Levels by Activating Three Novel Hydroxycinnamoyl-Coenzyme A:Polyamine Transferases in Nicotiana attenuata

(2011) N. Onkokesung et al.   PLANT PHYSIOLOGY

Tissue Specific Diurnal Rhythms of Metabolites and Their Regulation during Herbivore Attack in a Native Tobacco, Nicotiana attenuata

(2011) Sang-Gyu Kim et al.   PLoS One

Pseudomonas sax Genes Overcome Aliphatic Isothiocyanate-Mediated Non-Host Resistance in Arabidopsis

(2011) J. Fan et al.   SCIENCE

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

(2010) Bruno M Tesson et al.   BMC BIOINFORMATICS

Differential Effects of Indole and Aliphatic Glucosinolates on Lepidopteran Herbivores

(2010) René Müller et al.   JOURNAL OF CHEMICAL ECOLOGY

Jasmonate and ppHsystemin Regulate Key Malonylation Steps in the Biosynthesis of 17-Hydroxygeranyllinalool Diterpene Glycosides, an Abundant and Effective Direct Defense against Herbivores in Nicotiana attenuata

(2010) S. Heiling et al.   PLANT CELL

Oxylipin channelling in Nicotiana attenuata: lipoxygenase 2 supplies substrates for green leaf volatile production

(2010) SILKE ALLMANN et al.   PLANT CELL AND ENVIRONMENT

R2R3-NaMYB8 Regulates the Accumulation of Phenylpropanoid-Polyamine Conjugates, Which Are Essential for Local and Systemic Defense against Insect Herbivores in Nicotiana attenuata

(2010) H. Kaur et al.   PLANT PHYSIOLOGY

Plant-Microbe Interactions: Chemical Diversity in Plant Defense

(2009) P. Bednarek et al.   SCIENCE

Defining diversity, specialization, and gene specificity in transcriptomes through information theory

(2008) O. Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA