Illuminating a plant’s tissue-specific metabolic diversity using computational metabolomics and information theory

Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication

(2016) Pierre-Marie Allard et al.   ANALYTICAL CHEMISTRY

Organization of the Mammalian Metabolome according to Organ Function, Lineage Specialization, and Longevity

(2015) Siming Ma et al.   Cell Metabolism

A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence

(2015) Jakub Rajniak et al.   NATURE

Molecular identification of tuliposide B-converting enzyme: a lactone-forming carboxylesterase from the pollen of tulip

(2015) Taiji Nomura et al.   PLANT JOURNAL

Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis

(2015) Dapeng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Jasmonoyl-L-Isoleucine Coordinates Metabolic Networks Required for Anthesis and Floral Attractant Emission in Wild Tobacco (Nicotiana attenuata)

(2014) M. Stitz et al.   PLANT CELL

PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome

(2014) A. M. Eren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation

(2013) Tetsuya Sakurai et al.   PLANT AND CELL PHYSIOLOGY

Organ Evolution in Angiosperms Driven by Correlated Divergences of Gene Sequences and Expression Patterns

(2013) Ruolin Yang et al.   PLANT CELL

Gene Coexpression Analysis Reveals Complex Metabolism of the Monoterpene Alcohol Linalool in Arabidopsis Flowers

(2013) J.-F. Ginglinger et al.   PLANT CELL

Deciphering Herbivory-Induced Gene-to-Metabolite Dynamics in Nicotiana attenuata Tissues Using a Multifactorial Approach

(2013) J. Gulati et al.   PLANT PHYSIOLOGY

Assigning precursor–product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies

(2012) Corey D. Broeckling et al.   Metabolomics

Gene-Sharing Networks Reveal Organizing Principles of Transcriptomes inArabidopsisand Other Multicellular Organisms

(2012) Song Li et al.   PLANT CELL

Glandular trichomes: what comes after expressed sequence tags?

(2012) Alain Tissier   PLANT JOURNAL

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Rise of Chemodiversity in Plants

(2012) J.-K. Weng et al.   SCIENCE

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function

(2011) Takayuki Tohge et al.   Nature Protocols

GLYCOALKALOID METABOLISM1 Is Required for Steroidal Alkaloid Glycosylation and Prevention of Phytotoxicity in Tomato

(2011) M. Itkin et al.   PLANT CELL

MYB8 Controls Inducible Phenolamide Levels by Activating Three Novel Hydroxycinnamoyl-Coenzyme A:Polyamine Transferases in Nicotiana attenuata

(2011) N. Onkokesung et al.   PLANT PHYSIOLOGY

Trichome-derived O-acyl sugars are a first meal for caterpillars that tags them for predation

(2011) A. Weinhold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changing Pollinators as a Means of Escaping Herbivores

(2010) Danny Kessler et al.   CURRENT BIOLOGY

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

Dealing with the unknown: Metabolomics and Metabolite Atlases

(2010) Benjamin P. Bowen et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Phenolamides: Bridging polyamines to the phenolic metabolism

(2010) Jean-Etienne Bassard et al.   PHYTOCHEMISTRY

Jasmonate and ppHsystemin Regulate Key Malonylation Steps in the Biosynthesis of 17-Hydroxygeranyllinalool Diterpene Glycosides, an Abundant and Effective Direct Defense against Herbivores in Nicotiana attenuata

(2010) S. Heiling et al.   PLANT CELL

Studies of a Biochemical Factory: Tomato Trichome Deep Expressed Sequence Tag Sequencing and Proteomics

(2010) A. L. Schilmiller et al.   PLANT PHYSIOLOGY

Genome-wide identification of glucosinolate synthesis genes in Brassica rapa

(2009) Yun-Xiang Zang et al.   FEBS Journal

Statistical methods for analysis of high-throughput RNA interference screens

(2009) Amanda Birmingham et al.   NATURE METHODS

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development

(2009) F. Matsuda et al.   PLANT PHYSIOLOGY

Evolution of a Novel Phenolic Pathway for Pollen Development

(2009) M. Matsuno et al.   SCIENCE

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

Gene Expression and Metabolism in Tomato Fruit Surface Tissues

(2008) S. Mintz-Oron et al.   PLANT PHYSIOLOGY

Defining diversity, specialization, and gene specificity in transcriptomes through information theory

(2008) O. Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA