Genomic and transcriptomic inventory of membrane transporters in coffee: Exploring molecular mechanisms of metabolite accumulation

Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes

(2020) Rupesh Deshmukh et al.   PHYSIOLOGIA PLANTARUM

Downregulation of the auxin transporter gene SlPIN8 results in pollen abortion in tomato

(2019) Zengyu Gan et al.   PLANT MOLECULAR BIOLOGY

Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34

(2019) Simon G. Krattinger et al.   NEW PHYTOLOGIST

The multitasking abilities of MATE transporters in plants

(2019) Neha Upadhyay et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cytochrome P450 enzymes: A driving force of plant diterpene diversity

(2019) Ulschan Bathe et al.   PHYTOCHEMISTRY

TRANSPORTER OF IBA1 Links Auxin and Cytokinin to Influence Root Architecture

(2019) Marta Michniewicz et al.   DEVELOPMENTAL CELL

Correlation between the composition of green Arabica coffee beans and the sensory quality of coffee brews

(2019) Mayara de Souza Gois Barbosa et al.   FOOD CHEMISTRY

Purine permease-type benzylisoquinoline alkaloid transporters in opium poppy

(2019) Mehran Dastmalchi et al.   PLANT PHYSIOLOGY

Should I stay or should I go: are chlorogenic acids mobilized towards lignin biosynthesis?

(2019) Nathalia Volpi e Silva et al.   PHYTOCHEMISTRY

Analysis of gene co-expression networks of phosphate starvation and aluminium toxicity responses in Populus spp.

(2019) Thiago Bergamo Cardoso et al.   PLoS One

Transcriptome analysis of the induction of somatic embryogenesis in Coffea canephora and the participation of ARF and Aux/IAA genes

(2019) Ana O. Quintana-Escobar et al.   PeerJ

COFFEA CANEPHORA CLONES WITH MULTIPLE RESISTANCE TO MELOIDOGYNE INCOGNITA AND M. PARANAENSIS

(2018) BÁRBHARA J. R. FATOBENE et al.   EXPERIMENTAL AGRICULTURE

GhL1L1 affects cell fate specification by regulating GhPIN1-mediated auxin distribution

(2018) Jiao Xu et al.   PLANT BIOTECHNOLOGY JOURNAL

CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora

(2018) Jean-Christophe Breitler et al.   PLANT CELL TISSUE AND ORGAN CULTURE

FaTT12-1 , a multidrug and toxin extrusion (MATE) member involved in proanthocyanidin transport in strawberry fruits

(2018) Si-Yu Chen et al.   SCIENTIA HORTICULTURAE

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L

(2018) Gustavo C. Sant’Ana et al.   Scientific Reports

The coffee bean transcriptome explains the accumulation of the major bean components through ripening

(2018) Bing Cheng et al.   Scientific Reports

Coffee, caffeine, chlorogenic acid, and the purinergic system

(2018) Naiara Stefanello et al.   FOOD AND CHEMICAL TOXICOLOGY

OsPHT1;3 Mediates Uptake, Translocation and Remobilization of Phosphate under Extremely Low Phosphate Regimes

(2018) Mingxing Chang et al.   PLANT PHYSIOLOGY

Activity of the purified plant ABC transporter NtPDR1 is stimulated by diterpenes and sesquiterpenes involved in constitutive and induced defenses

(2017) Baptiste Pierman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development

(2017) Suzana T. Ivamoto et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Localization and transport of indole-3-acetic acid during somatic embryogenesis in Coffea canephora

(2017) Ruth E. Márquez-López et al.   PROTOPLASMA

Origin and evolution of transporter substrate specificity within the NPF family

(2017) Morten Egevang Jørgensen et al.   eLife

Chlorogenic acids, caffeine content and antioxidant properties of green coffee extracts: influence of green coffee bean preparation

(2016) Magdalena Jeszka-Skowron et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Interactions between major chlorogenic acid isomers and chemical changes in coffee brew that affect antioxidant activities

(2016) Ningjian Liang et al.   FOOD CHEMISTRY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

MATE Transporter-Dependent Export of Hydroxycinnamic Acid Amides

(2016) Melanie Dobritzsch et al.   PLANT CELL

A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition inArabidopsis thaliana

(2016) Anderson Tadeu Silva et al.   PLANT PHYSIOLOGY

Overexpression of AtABCG25 enhances the abscisic acid signal in guard cells and improves plant water use efficiency

(2016) Takashi Kuromori et al.   PLANT SCIENCE

Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields

(2016) Xiaorong Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Next generation variety development for sustainable production of arabica coffee (Coffea arabica L.): a review

(2015) Herbert van der Vossen et al.   EUPHYTICA

Binding of caffeine with caffeic acid and chlorogenic acid using fluorescence quenching, UV/vis and FTIR spectroscopic techniques

(2015) Abebe Belay et al.   LUMINESCENCE

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Climate and Pest-Driven Geographic Shifts in Global Coffee Production: Implications for Forest Cover, Biodiversity and Carbon Storage

(2015) Ainhoa Magrach et al.   PLoS One

Visualization of cellulose synthases in Arabidopsis secondary cell walls

(2015) Y. Watanabe et al.   SCIENCE

Multiclass Classification of Agro-Ecological Zones for Arabica Coffee: An Improved Understanding of the Impacts of Climate Change

(2015) Christian Bunn et al.   PLoS One

Conversion of nicotinic acid to trigonelline is catalyzed by N-methyltransferase belonged to motif B′ methyltransferase family in Coffea arabica

(2014) Kouichi Mizuno et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

NMR Studies of Hetero-Association of Caffeine with di-O-Caffeoylquinic Acid Isomers in Aqueous Solution

(2014) Nicola D’Amelio et al.   Food Biophysics

Alkaloid transporters in plants

(2014) Nobukazu Shitan et al.   Plant Biotechnology

VvMATE1 and VvMATE2 encode putative proanthocyanidin transporters expressed during berry development in Vitis vinifera L.

(2014) Ricardo Pérez-Díaz et al.   PLANT CELL REPORTS

Dual Catalytic Activity of Hydroxycinnamoyl-Coenzyme A Quinate Transferase from Tomato Allows It to Moonlight in the Synthesis of Both Mono- and Dicaffeoylquinic Acids

(2014) A. Moglia et al.   PLANT PHYSIOLOGY

Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta)

(2014) Charlène Perrois et al.   PLANTA

Involvement of the Leaf-Specific Multidrug and Toxic Compound Extrusion (MATE) Transporter Nt-JAT2 in Vacuolar Sequestration of Nicotine in Nicotiana tabacum

(2014) Nobukazu Shitan et al.   PLoS One

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Unknown components of the plastidial permeome

(2014) Thea R. Pick et al.   Frontiers in Plant Science

NtPDR1, a plasma membrane ABC transporter from Nicotiana tabacum, is involved in diterpene transport

(2013) Jérôme Crouzet et al.   PLANT MOLECULAR BIOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

A Structural Basis for the Biosynthesis of the Major Chlorogenic Acids Found in Coffee

(2012) L. A. Lallemand et al.   PLANT PHYSIOLOGY

Single-spanning transmembrane domains in cell growth and cell-cell interactions

(2010) Pierre Hubert et al.   Cell Adhesion & Migration

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters

(2009) V. A. Benedito et al.   PLANT PHYSIOLOGY

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Comparative molecular biological analysis of membrane transport genes in organisms

(2008) Toshifumi Nagata et al.   PLANT MOLECULAR BIOLOGY

Plant ABC proteins – a unified nomenclature and updated inventory

(2008) Paul J. Verrier et al.   TRENDS IN PLANT SCIENCE