Stress responses and epigenomic instability mark the loss of somatic embryogenesis competence in grapevine

Regeneration of plants from embryogenic callus-derived protoplasts of Garganega and Sangiovese grapevine (Vitis vinifera L.) cultivars

(2019) Edoardo Bertini et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean

(2019) Lexiang Ji et al.   PLANT CELL

Plant gene editing through de novo induction of meristems

(2019) Michael F. Maher et al.   NATURE BIOTECHNOLOGY

Multi-omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation (SRA) process

(2018) Jianying Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Grapevine field experiments reveal the contribution of genotype, the influence of environment and the effect of their interaction (G×E) on the berry transcriptome

(2018) Silvia Dal Santo et al.   PLANT JOURNAL

Dynamic Epigenetic Changes during Plant Regeneration

(2018) Kyounghee Lee et al.   TRENDS IN PLANT SCIENCE

Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway

(2018) Vicente Balanzà et al.   Nature Communications

miRVIT: A Novel miRNA Database and Its Application to Uncover Vitis Responses to Flavescence dorée Infection

(2018) Walter Chitarra et al.   Frontiers in Plant Science

Comparative metabolomics and glycolysis enzyme profiling of embryogenic and nonembryogenic grape cells

(2018) Jonathan Parrilla et al.   FEBS Open Bio

Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation

(2018) Anjar Wibowo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shaping Plant Adaptability, Genome Structure and Gene Expression through Transposable Element Epigenetic Control: Focus on Methylation

(2018) Leonardo Galindo-González et al.   Agronomy-Basel

CRISPR–Cas9-mediated genome editing in apple and grapevine

(2018) Yuriko Osakabe et al.   Nature Protocols

The Accumulation of miRNAs Differentially Modulated by Drought Stress Is Affected by Grafting in Grapevine

(2017) Chiara Pagliarani et al.   PLANT PHYSIOLOGY

Small RNAs: Big Impact on Plant Development

(2017) Marco D’Ario et al.   TRENDS IN PLANT SCIENCE

Grapevine Grafting: Scion Transcript Profiling and Defense-Related Metabolites Induced by Rootstocks

(2017) Walter Chitarra et al.   Frontiers in Plant Science

Breeding next generation tree fruits: technical and legal challenges

(2017) Lorenza Dalla Costa et al.   Horticulture Research

Cultivar-specific gene modulation in Vitis vinifera: analysis of the promoters regulating the expression of WOX transcription factors

(2017) Paolo Boccacci et al.   Scientific Reports

DNA methylome of the 20-gigabase Norway spruce genome

(2016) Israel Ausin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies

(2016) Yuvraj Indoliya et al.   Scientific Reports

Application of Somatic Embryogenesis in Woody Plants.

(2016) Yuan Guan et al.   Frontiers in Plant Science

DNA-Free Genetically Edited Grapevine and Apple Protoplast Using CRISPR/Cas9 Ribonucleoproteins

(2016) Mickael Malnoy et al.   Frontiers in Plant Science

Towards an open grapevine information system

(2016) A-F Adam-Blondon et al.   Horticulture Research

Novel functional microRNAs from virus-free and infected Vitis vinifera plants under water stress

(2016) Vitantonio Pantaleo et al.   Scientific Reports

CRISPR/Cas9-mediated efficient targeted mutagenesis in Chardonnay (Vitis vinifera L.)

(2016) Chong Ren et al.   Scientific Reports

Somatic embryogenesis — Stress-induced remodeling of plant cell fate

(2015) Attila Fehér   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

(2015) Jayakumar Belli Kullan et al.   BMC GENOMICS

Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro

(2015) Anushka M Wickramasuriya et al.   BMC GENOMICS

Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm

(2015) Meilina Ong-Abdullah et al.   NATURE

Spatiotemporal Sequestration of miR165/166 by Arabidopsis Argonaute10 Promotes Shoot Apical Meristem Maintenance

(2015) Yuyi Zhou et al.   Cell Reports

Somatic Embryogenesis: Identified Factors that Lead to Embryogenic Repression. A Case of Species of the Same Genus

(2015) Geovanny I. Nic-Can et al.   PLoS One

The role of sugar signaling in plant defense responses against fungal pathogens

(2014) Iwona Morkunas et al.   ACTA PHYSIOLOGIAE PLANTARUM

The grapevine gene nomenclature system

(2014) Jérôme Grimplet et al.   BMC GENOMICS

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

(2014) Xuehua Zhong et al.   CELL

Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes

(2014) Stella A. G. D. Salvo et al.   PLoS One

Carlactone is converted to carlactonoic acid by MAX1 inArabidopsisand its methyl ester can directly interact with AtD14 in vitro

(2014) Satoko Abe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Potential link between biotic defense activation and recalcitrance to induction of somatic embryogenesis in shoot primordia from adult trees of white spruce (Picea glauca)

(2013) Robert G Rutledge et al.   BMC PLANT BIOLOGY

Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin

(2013) Yaling Song et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MicroRNAs and Their Cross-Talks in Plant Development

(2013) Danfeng Jin et al.   Journal of Genetics and Genomics

Comparative transcriptome analysis between somatic embryos (SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development

(2013) Fangyan Jin et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant Callus: Mechanisms of Induction and Repression

(2013) M. Ikeuchi et al.   PLANT CELL

Transcriptome-wide analysis of dynamic variations in regulation modes of grapevine microRNAs on their target genes during grapevine development

(2013) Chen Wang et al.   PLANT MOLECULAR BIOLOGY

New Insights into Somatic Embryogenesis: LEAFY COTYLEDON1, BABY BOOM1 and WUSCHEL-RELATED HOMEOBOX4 Are Epigenetically Regulated in Coffea canephora

(2013) Geovanny I. Nic-Can et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

(2012) Joseph P. Calarco et al.   CELL

A DNA 3′ Phosphatase Functions in Active DNA Demethylation in Arabidopsis

(2012) María Isabel Martínez-Macías et al.   MOLECULAR CELL

The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program

(2012) M. Fasoli et al.   PLANT CELL

Epigenetic mechanisms of plant-derived anticancer drugs

(2011) Regine Schneider-Stock   Frontiers in Bioscience-Landmark

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

(2011) Hongcang Gu et al.   Nature Protocols

Regulation of Somatic Embryogenesis in Higher Plants

(2010) Xiyan Yang et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Arabidopsis Regeneration from Multiple Tissues Occurs via a Root Development Pathway

(2010) Kaoru Sugimoto et al.   DEVELOPMENTAL CELL

Characterization of expression dynamics of WOX homeodomain transcription factors during somatic embryogenesis in Vitis vinifera

(2010) Giorgio Gambino et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential regulation of SERK, LEC1-Like and Pathogenesis-Related genes during indirect secondary somatic embryogenesis in grapevine

(2009) Pascale Maillot et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Stress response proteins’ differential expression in embryogenic and non-embryogenic callus of Vitis vinifera L. cv. Cabernet Sauvignon—A proteomic approach

(2009) Jiangwei Zhang et al.   PLANT SCIENCE

Characterization of VvSERK1, VvSERK2, VvSERK3 and VvL1L genes and their expression during somatic embryogenesis of grapevine (Vitis vinifera L.)

(2008) Paul Schellenbaum et al.   PLANT CELL REPORTS

Molecular regulation of somatic embryogenesis in potato: an auxin led perspective

(2008) Sanjeev Kumar Sharma et al.   PLANT MOLECULAR BIOLOGY