miRVIT: A Novel miRNA Database and Its Application to Uncover Vitis Responses to Flavescence dorée Infection

Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data

(2018) Michael J. Axtell et al.   PLANT CELL

MiRNA-seq-based profiles of miRNAs in mulberry phloem sap provide insight into the pathogenic mechanisms of mulberry yellow dwarf disease

(2018) Ying-Ping Gai et al.   Scientific Reports

Statistical modeling of long-term grapevine response to ‘Candidatus Phytoplasma solani’ infection in the field

(2017) Ana Rotter et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

The enemy within: phloem-limited pathogens

(2017) Claire Bendix et al.   MOLECULAR PLANT PATHOLOGY

Conservation of microRNA-mediated regulatory networks in response to copper stress in grapevine

(2017) Xiangpeng Leng et al.   PLANT GROWTH REGULATION

The Accumulation of miRNAs Differentially Modulated by Drought Stress Is Affected by Grafting in Grapevine

(2017) Chiara Pagliarani et al.   PLANT PHYSIOLOGY

Space-Time Point Pattern Analysis of Flavescence Dorée Epidemic in a Grapevine Field: Disease Progression and Recovery

(2017) Federico Maggi et al.   Frontiers in Plant Science

Characterization and Function of MicroRNA∗s in Plants

(2017) Wei-wei Liu et al.   Frontiers in Plant Science

The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. ‘Chardonnay’

(2017) Marius C. Snyman et al.   PLoS One

Whole-genome sequencing and SNV genotyping of ‘Nebbiolo’ (Vitis vinifera L.) clones

(2017) Giorgio Gambino et al.   Scientific Reports

Differential expression of miRNAs and associated gene targets in grapevine leafroll-associated virus 3-infected plants

(2016) Rachelle Bester et al.   ARCHIVES OF VIROLOGY

Characterization of miRNAs responsive to exogenous ethylene in grapevine berries at whole genome level

(2016) Fanggui Zhao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. “Modra frankinja” with Flavescence Dorée Phytoplasma

(2016) Nina Prezelj et al.   Frontiers in Plant Science

Identification and Characterization of Erysiphe necator-Responsive MicroRNAs in Chinese Wild Vitis pseudoreticulata by High-Throughput Sequencing

(2016) Lijuan Han et al.   Frontiers in Plant Science

VESPUCCI: Exploring Patterns of Gene Expression in Grapevine

(2016) Marco Moretto et al.   Frontiers in Plant Science

The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry

(2016) Daniela Lopes Paim Pinto et al.   Frontiers in Plant Science

Genome-Wide Identification and Analysis of MicroRNAs Involved in Witches’-Broom Phytoplasma Response in Ziziphus jujuba

(2016) Fenjuan Shao et al.   PLoS One

Novel functional microRNAs from virus-free and infected Vitis vinifera plants under water stress

(2016) Vitantonio Pantaleo et al.   Scientific Reports

miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

(2015) Jayakumar Belli Kullan et al.   BMC GENOMICS

A knowledge base for Vitis vinifera functional analysis

(2015) Alfredo Pulvirenti et al.   BMC Systems Biology

Evolution of NBS-LRR Gene Copies among Dicot Plants and its Regulation by Members of the miR482/2118 Superfamily of miRNAs

(2015) Víctor M. González et al.   Molecular Plant

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

StarScan: a web server for scanning small RNA targets from degradome sequencing data

(2015) Shun Liu et al.   NUCLEIC ACIDS RESEARCH

Spatiotemporal Sequestration of miR165/166 by Arabidopsis Argonaute10 Promotes Shoot Apical Meristem Maintenance

(2015) Yuyi Zhou et al.   Cell Reports

Genome-Wide Mapping and Analysis of Grapevine MicroRNAs and Their Potential Target Genes

(2015) Songtao Jiu et al.   Plant Genome

Identification of cold-inducible microRNAs in grapevine

(2015) Xiaoming Sun et al.   Frontiers in Plant Science

Grapevine microRNAs responsive to exogenous gibberellin

(2014) Jian Han et al.   BMC GENOMICS

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

(2014) D. Roeland Boer et al.   CELL

REVOLUTA and WRKY53 connect early and late leaf development in Arabidopsis

(2014) Y. Xie et al.   DEVELOPMENT

Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato

(2014) Ning Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic and transcript analysis of the flavonoid pathway in diseased and recovered Nebbiolo and Barbera grapevines (Vitis vinifera L.) following infection by Flavescence dorée phytoplasma

(2014) PAOLO MARGARIA et al.   PLANT CELL AND ENVIRONMENT

microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development

(2014) Geraldo Felipe Ferreira e Silva et al.   PLANT JOURNAL

Analysis of phytoplasma-responsive sRNAs provide insight into the pathogenic mechanisms of mulberry yellow dwarf disease

(2014) Ying-Ping Gai et al.   Scientific Reports

The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways

(2014) Nami Minato et al.   Scientific Reports

Flavescence dorée phytoplasma deregulates stomatal control of photosynthesis inVitis vinifera

(2013) M. Vitali et al.   ANNALS OF APPLIED BIOLOGY

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Novel aspects of grapevine response to phytoplasma infection investigated by a proteomic and phospho-proteomic approach with data integration into functional networks

(2013) Paolo Margaria et al.   BMC GENOMICS

VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine)

(2013) Darren CJ Wong et al.   BMC GENOMICS

Characterization of target mRNAs for grapevine microRNAs with an integrated strategy of modified RLM-RACE, newly developed PPM-RACE and qPCRs

(2013) Chen Wang et al.   JOURNAL OF PLANT PHYSIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Hydrogen Peroxide Accumulation and Transcriptional Changes in Grapevines Recovered from Flavescence Dorée Disease

(2013) Giorgio Gambino et al.   PHYTOPATHOLOGY

Transcriptome-wide analysis of dynamic variations in regulation modes of grapevine microRNAs on their target genes during grapevine development

(2013) Chen Wang et al.   PLANT MOLECULAR BIOLOGY

Over-Expression of VvWRKY1 in Grapevines Induces Expression of Jasmonic Acid Pathway-Related Genes and Confers Higher Tolerance to the Downy Mildew

(2013) Chloé Marchive et al.   PLoS One

Genome-Wide Analysis of the Expansin Gene Superfamily Reveals Grapevine-Specific Structural and Functional Characteristics

(2013) Silvia Dal Santo et al.   PLoS One

Phytoplasma-Responsive microRNAs Modulate Hormonal, Nutritional, and Stress Signalling Pathways in Mexican Lime Trees

(2013) Farveh Ehya et al.   PLoS One

Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics

(2012) Chen Wang et al.   BMC GENOMICS

Small RNA profiling of virus-infected grapevines: evidences for virus infection-associated and variety-specific miRNAs

(2012) Kashmir Singh et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

High-throughput sequence analysis of small RNAs in grapevine (Vitis viniferaL.) affected by grapevine leafroll disease

(2012) Olufemi J. Alabi et al.   MOLECULAR PLANT PATHOLOGY

Emerging role for RNA-based regulation in plant immunity

(2012) Dorothee Staiger et al.   NEW PHYTOLOGIST

Auxin ControlsArabidopsisAdventitious Root Initiation by Regulating Jasmonic Acid Homeostasis

(2012) Laurent Gutierrez et al.   PLANT CELL

Genome-Wide Identification of Reverse Complementary microRNA Genes in Plants

(2012) Chaogang Shao et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Evaluation of Chemical and Natural Resistance Inducers against Downy Mildew (Plasmopara viticola) in Grapevine

(2011) A. Harm et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

(2011) Alexis Dereeper et al.   BMC BIOINFORMATICS

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

(2011) Chen Wang et al.   PHYSIOLOGIA PLANTARUM

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis

(2011) A. Sugio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SQUAMOSA Promoter-Binding Protein-Like Transcription Factors: Star Players for Plant Growth and Development

(2010) Xiaobo Chen et al.   Journal of Integrative Plant Biology

Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis

(2010) Vitantonio Pantaleo et al.   PLANT JOURNAL

'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine

(2009) Matjaž Hren et al.   BMC GENOMICS

Cloning and characterization of small non-coding RNAs from grape

(2009) Andrea Carra et al.   PLANT JOURNAL

VitisNet: “Omics” Integration through Grapevine Molecular Networks

(2009) Jérôme Grimplet et al.   PLoS One

A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium

(2009) A. Hoshi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

MicroRNA maturation and action—the expanding roles of ARGONAUTEs

(2008) Allison C Mallory et al.   CURRENT OPINION IN PLANT BIOLOGY

Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci

(2008) D. M. Tyler et al.   GENES & DEVELOPMENT

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Control of Jasmonate Biosynthesis and Senescence by miR319 Targets

(2008) Carla Schommer et al.   PLOS BIOLOGY