A cross‐scale approach to unravel the molecular basis of plant phenology in temperate and tropical climates

Testing the environmental prediction hypothesis for community‐wide mass flowering in South‐East Asia

(2021) Akiko Satake et al.   BIOTROPICA

A hundred years after: endodormancy and the chilling requirement in subtropical trees

(2021) Pawan Kumar Jewaria et al.   NEW PHYTOLOGIST

Studying the genetic basis of masting

(2021) Akiko Satake et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular control of masting: an introduction to an epigenetic summer memory

(2020) Samarth et al.   ANNALS OF BOTANY

Repressive chromatin modification underpins the long-term expression trend of a perennial flowering gene in nature

(2020) Haruki Nishio et al.   Nature Communications

Quantitative genetic architecture of adaptive phenology traits in the deciduous tree, Populus trichocarpa (Torr. and Gray)

(2020) Thomas J. Richards et al.   HEREDITY

Temperature is a dominant driver of distinct annual seasonality of leaf litter production of equatorial tropical rain forests

(2020) Kanehiro Kitayama et al.   JOURNAL OF ECOLOGY

Flowering phenology in a Eucalyptus loxophleba seed orchard, heritability and genetic correlation with biomass production and cineole: breeding strategy implications

(2020) Beren Spencer et al.   Scientific Reports

The chilling requirement of subtropical trees is fulfilled by high temperatures: A generalized hypothesis for tree endodormancy release and a method for testing it

(2020) Rui Zhang et al.   AGRICULTURAL AND FOREST METEOROLOGY

Seasonal and long-term patterns in litterfall in a Bornean tropical rainforest

(2019) Michiko Nakagawa et al.   ECOLOGICAL RESEARCH

Synchronized expression of FLOWERING LOCUS T between branches underlies mass flowering in Fagus crenata

(2019) Akiko Satake et al.   POPULATION ECOLOGY

I Want to (Bud) Break Free: The Potential Role of DAM and SVP-Like Genes in Regulating Dormancy Cycle in Temperate Fruit Trees

(2019) Vítor da Silveira Falavigna et al.   Frontiers in Plant Science

Tropical phenology: Recent advances and perspectives

(2019) Shoko Sakai et al.   ECOLOGICAL RESEARCH

Climate Change in the Tropics: Ecological and Evolutionary Responses at Low Latitudes

(2019) Kimberly S. Sheldon   Annual Review of Ecology Evolution and Systematics

Quantitative comparison of flowering phenology traits among trees, perennial herbs, and annuals in a temperate plant community

(2019) Ai Nagahama et al.   AMERICAN JOURNAL OF BOTANY

Clinal variation in growth cessation and FTL2 expression in Siberian spruce

(2019) Lili Li et al.   Tree Genetics & Genomes

From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy

(2019) Noémie Vimont et al.   BMC GENOMICS

From theory to experiments for testing the proximate mechanisms of mast seeding: an agenda for an experimental ecology

(2019) Michał Bogdziewicz et al.   ECOLOGY LETTERS

Fruiting phenology is linked to rainfall variability in a tropical rain forest

(2018) Amy E. Dunham et al.   BIOTROPICA

Climate warming shortens flowering duration: a comprehensive assessment of plant phenological responses based on gene expression analyses and mathematical modeling

(2018) Ai Nagahama et al.   ECOLOGICAL RESEARCH

Human influence on the seasonal cycle of tropospheric temperature

(2018) Benjamin D. Santer et al.   SCIENCE

Evolutionary and ecological functional genomics, from lab to the wild

(2018) Maricris L. Zaidem et al.   PLANT JOURNAL

Climate-driven declines in arthropod abundance restructure a rainforest food web

(2018) Bradford C. Lister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genetic network mediating the control of bud break in hybrid aspen

(2018) Rajesh Kumar Singh et al.   Nature Communications

Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets

(2018) Keiichi Mochida et al.   Frontiers in Plant Science

Continental-scale patterns and climatic drivers of fruiting phenology: A quantitative Neotropical review

(2017) Irene Mendoza et al.   GLOBAL AND PLANETARY CHANGE

Species-specific flowering cues among general flowering Shorea species at the Pasoh Research Forest, Malaysia

(2017) Yu-Yun Chen et al.   JOURNAL OF ECOLOGY

Unravelling proximate cues of mass flowering in the tropical forests of South-East Asia from gene expression analyses

(2017) Suat Hui Yeoh et al.   MOLECULAR ECOLOGY

Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple

(2017) Jorge Urrestarazu et al.   Frontiers in Plant Science

Linking plant phenology to conservation biology

(2016) Leonor Patrícia Cerdeira Morellato et al.   BIOLOGICAL CONSERVATION

Parameterisation and validation of a resource budget model for masting using spatiotemporal flowering data of individual trees

(2016) Tomoyuki Abe et al.   ECOLOGY LETTERS

Photoperiod- and temperature-mediated control of phenology in trees - a molecular perspective

(2016) Rajesh Kumar Singh et al.   NEW PHYTOLOGIST

Changing Responses to Changing Seasons: Natural Variation in the Plasticity of Flowering Time

(2016) Benjamin K. Blackman   PLANT PHYSIOLOGY

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifoliawhite pear group) flower bud

(2015) Qingfeng Niu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function

(2015) Julien Prunier et al.   NEW PHYTOLOGIST

Molecular phenology in plants: in natura systems biology for the comprehensive understanding of seasonal responses under natural environments

(2015) Hiroshi Kudoh   NEW PHYTOLOGIST

FLOR-ID: an interactive database of flowering-time gene networks inArabidopsis thaliana

(2015) Frédéric Bouché et al.   NUCLEIC ACIDS RESEARCH

A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species

(2015) Shosei Kubota et al.   PLoS Genetics

Coordinated Expression of FLOWERING LOCUS T and DORMANCY ASSOCIATED MADS-BOX-Like Genes in Leafy Spurge

(2015) Xinyuan Hao et al.   PLoS One

The Cloning and Functional Characterization of Peach CONSTANS and FLOWERING LOCUS T Homologous Genes PpCO and PpFT

(2015) Xiang Zhang et al.   PLoS One

Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch]

(2015) Douglas Gary Bielenberg et al.   PLoS One

Nitrogen as a key regulator of flowering inFagus crenata: understanding the physiological mechanism of masting by gene expression analysis

(2014) Yuko Miyazaki et al.   ECOLOGY LETTERS

Insolation and photoperiodic control of tree development near the equator

(2014) Rolf Borchert et al.   NEW PHYTOLOGIST

Association ofFLOWERING LOCUS T/TERMINAL FLOWER 1-like geneFTL2expression with growth rhythm in Scots pine (Pinus sylvestris)

(2014) Komlan Avia et al.   NEW PHYTOLOGIST

Genotype × environment interaction QTL mapping in plants: lessons from Arabidopsis

(2014) Mohamed El-Soda et al.   TRENDS IN PLANT SCIENCE

The Population Genetics of Evolutionary Rescue

(2014) H. Allen Orr et al.   PLoS Genetics

Mass flowering of the tropical treeShorea beccarianawas preceded by expression changes in flowering and drought-responsive genes

(2013) Masaki J. Kobayashi et al.   MOLECULAR ECOLOGY

Geographical and environmental gradients shape phenotypic trait variation and genetic structure inPopulus trichocarpa

(2013) Athena D. McKown et al.   NEW PHYTOLOGIST

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Demonstration of Genome-Wide Association Studies for Identifying Markers for Wood Property and Male Strobili Traits in Cryptomeria japonica

(2013) Kentaro Uchiyama et al.   PLoS One

Latitudinal clines: an evolutionary view on biological rhythms

(2013) R. A. Hut et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Forecasting flowering phenology under climate warming by modelling the regulatory dynamics of flowering-time genes

(2013) Akiko Satake et al.   Nature Communications

Flowering and Fruiting Patterns in a Subtropical Rain Forest, Taiwan

(2012) Chia-Hao Chang-Yang et al.   BIOTROPICA

A stochastic model of chromatin modification: Cell population coding of winter memory in plants

(2012) Akiko Satake et al.   JOURNAL OF THEORETICAL BIOLOGY

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

The genetic basis of flowering responses to seasonal cues

(2012) Fernando Andrés et al.   NATURE REVIEWS GENETICS

Divergent responses to spring and winter warming drive community level flowering trends

(2012) B. I. Cook et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate change impacts on winter chill for temperate fruit and nut production: A review

(2012) Eike Luedeling   SCIENTIA HORTICULTURAE

Genome-Wide Patterns of Arabidopsis Gene Expression in Nature

(2012) Christina L. Richards et al.   PLoS Genetics

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Functional and Expressional Analyses of PmDAM Genes Associated with Endodormancy in Japanese Apricot

(2011) Ryuta Sasaki et al.   PLANT PHYSIOLOGY

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

(2011) C.-Y. Hsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations

(2010)   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Seasonal and developmental timing of flowering

(2010) Richard Amasino   PLANT JOURNAL

Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment

(2010) S. Aikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene networks controlling the initiation of flower development

(2010) Frank Wellmer et al.   TRENDS IN GENETICS

Phenology, ontogeny and the effects of climate change on the timing of species interactions

(2009) Louie H. Yang et al.   ECOLOGY LETTERS

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana

(2008) Siegbert Melzer et al.   NATURE GENETICS

A maize CONSTANS-like gene, conz1, exhibits distinct diurnal expression patterns in varied photoperiods

(2008) Theresa A. Miller et al.   PLANTA

Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation

(2008) Douglas Gary Bielenberg et al.   Tree Genetics & Genomes

Marker-assisted selection: an approach for precision plant breeding in the twenty-first century

(2007) B. C.Y Collard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES