The Gut Microbiome of Pediatric Crohnʼs Disease Patients Differs from Healthy Controls in Genes That Can Influence the Balance Between a Healthy and Dysregulated Immune Response

Induction of regulatory T cells: A role for probiotics and prebiotics to suppress autoimmunity

(2016) Mitesh Dwivedi et al.   AUTOIMMUNITY REVIEWS

Novel Strategies for Applied Metagenomics

(2016) Jessica M. Moore-Connors et al.   INFLAMMATORY BOWEL DISEASES

Inherited determinants of Crohn's disease and ulcerative colitis phenotypes: a genetic association study

(2016) Isabelle Cleynen et al.   LANCET

Fostering Inflammatory Bowel Disease: Sphingolipid Strategies to Join Forces

(2016) Loubna Abdel Hadi et al.   MEDIATORS OF INFLAMMATION

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Population-level analysis of gut microbiome variation

(2016) Gwen Falony et al.   SCIENCE

Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease

(2016) H. Chu et al.   SCIENCE

Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition

(2015) Christopher Quince et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease

(2015) James D. Lewis et al.   Cell Host & Microbe

Feeding immunity: skepticism, delicacies and delights

(2015) Marc Veldhoen et al.   NATURE IMMUNOLOGY

Selective Manipulation of the Gut Microbiota Improves Immune Status in Vertebrates

(2015) Ana Montalban-Arques et al.   Frontiers in Immunology

Metabolome of human gut microbiome is predictive of host dysbiosis

(2015) Peter E. Larsen et al.   GigaScience

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Sphingolipids from a Symbiotic Microbe Regulate Homeostasis of Host Intestinal Natural Killer T Cells

(2014) Dingding An et al.   CELL

Comparison of Outcomes Parameters for Induction of Remission in New Onset Pediatric Crohnʼs Disease

(2014) Arie Levine et al.   INFLAMMATORY BOWEL DISEASES

Decline in Presumptively Protective Gut Bacterial Species and Metabolites Are Paradoxically Associated with Disease Improvement in Pediatric Crohn’s Disease During Enteral Nutrition

(2014) Konstantinos Gerasimidis et al.   INFLAMMATORY BOWEL DISEASES

Nitroaromatic compounds: Environmental toxicity, carcinogenicity, mutagenicity, therapy and mechanism

(2014) Peter Kovacic et al.   JOURNAL OF APPLIED TOXICOLOGY

The Molecular Chaperone HSP70 Binds to and Stabilizes NOD2, an Important Protein Involved in Crohn Disease

(2014) Vishnu Mohanan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Advances in IBD genetics

(2014) Johan Van Limbergen et al.   Nature Reviews Gastroenterology & Hepatology

Serum and urine metabolomic fingerprinting in diagnostics of inflammatory bowel diseases

(2014) Tomasz Dawiskiba   WORLD JOURNAL OF GASTROENTEROLOGY

Insights into the molecular basis of the NOD2 signalling pathway

(2014) J. P. Boyle et al.   Open Biology

BiomeNet: A Bayesian Model for Inference of Metabolic Divergence among Microbial Communities

(2014) Mahdi Shafiei et al.   PLoS Computational Biology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Differences in the management of pediatric and adult onset ulcerative colitis — lessons from the joint ECCO and ESPGHAN consensus guidelines for the management of pediatric ulcerative colitis

(2013) Frank M. Ruemmele et al.   Journal of Crohns & Colitis

Exclusive enteral nutrition induces early clinical, mucosal and transmural remission in paediatric Crohn’s disease

(2013) Zubin Grover et al.   JOURNAL OF GASTROENTEROLOGY

Induced IL-17-Producing Invariant NKT Cells Require Activation in Presence of TGF-  and IL-1 

(2013) M. Monteiro et al.   JOURNAL OF IMMUNOLOGY

Succinate is an inflammatory signal that induces IL-1β through HIF-1α

(2013) G. M. Tannahill et al.   NATURE

Succinate: a metabolic signal in inflammation

(2013) Evanna Mills et al.   TRENDS IN CELL BIOLOGY

Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ

(2013) Caitriona M. Guinane et al.   Therapeutic Advances in Gastroenterology

Changes of faecal microbiota in patients with Crohn's disease treated with an elemental diet and total parenteral nutrition

(2012) Hisashi Shiga et al.   DIGESTIVE AND LIVER DISEASE

Lipidomic profiling in Crohn's disease: Abnormalities in phosphatidylinositols, with preservation of ceramide, phosphatidylcholine and phosphatidylserine composition

(2012) Gavin W. Sewell et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Proteasomal Degradation of Nod2 Protein Mediates Tolerance to Bacterial Cell Wall Components

(2012) Kyoung-Hee Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IL-1β mediates chronic intestinal inflammation by promoting the accumulation of IL-17A secreting innate lymphoid cells and CD4+Th17 cells

(2012) Margherita Coccia et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition

(2012) Ellen Li et al.   PLoS One

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Functional analysis of colonic bacterial metabolism: relevant to health?

(2011) Henrike M. Hamer et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

(2011) M. Joossens et al.   GUT

Mathematical weighting of the pediatric Crohnʼs disease activity index (PCDAI) and comparison with its other short versions

(2011) Dan Turner et al.   INFLAMMATORY BOWEL DISEASES

Intestinal homeostasis and its breakdown in inflammatory bowel disease

(2011) Kevin J. Maloy et al.   NATURE

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Intestinal Bacteria and the Regulation of Immune Cell Homeostasis

(2010) David A. Hill et al.   Annual Review of Immunology

Nutritional therapy for the treatment of pediatric Crohn’s disease

(2010) Anthony R Otley et al.   Expert Review of Clinical Immunology

Pediatric modification of the Montreal classification for inflammatory bowel disease

(2010) Arie Levine et al.   INFLAMMATORY BOWEL DISEASES

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

(2010) J. L. Round et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Induction of lamina propria Th17 cells by intestinal commensal bacteria

(2010) Koji Atarashi et al.   VACCINE

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The HSP90-SGT1 Chaperone Complex for NLR Immune Sensors

(2008) Ken Shirasu   Annual Review of Plant Biology

Definition of Phenotypic Characteristics of Childhood-Onset Inflammatory Bowel Disease

(2008) Johan Van Limbergen et al.   GASTROENTEROLOGY

Microbial Influences in Inflammatory Bowel Diseases

(2008) R. Balfour Sartor   GASTROENTEROLOGY

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA