The Human Connectome Project: A retrospective

The NonHuman Primate Neuroimaging & Neuroanatomy Project

(2021) Takuya Hayashi et al.   NEUROIMAGE

A whole-cortex probabilistic diffusion tractography connectome

(2021) Burke Q. Rosen et al.   eNeuro

The Open Brain Consent : Informing research participants and obtaining consent to share brain imaging data

(2021) Elise Bannier et al.   HUMAN BRAIN MAPPING

Changing the face of neuroimaging research: Comparing a new MRI de-facing technique with popular alternatives

(2021) Christopher G. Schwarz et al.   NEUROIMAGE

Brain/MINDS beyond human brain MRI project: A protocol for multi-level harmonization across brain disorders throughout the lifespan

(2021) Shinsuke Koike et al.   NeuroImage-Clinical

In vivo human whole-brain Connectom diffusion MRI dataset at 760 µm isotropic resolution

(2021) Fuyixue Wang et al.   Scientific Data

Evoking highly focal percepts in the fingertips through targeted stimulation of sulcal regions of the brain for sensory restoration

(2021) Santosh Chandrasekaran et al.   Brain Stimulation

Baseline brain function in the preadolescents of the ABCD Study

(2021) B. Chaarani et al.   NATURE NEUROSCIENCE

Movie-watching outperforms rest for functional connectivity-based prediction of behavior

(2021) Emily S. Finn et al.   NEUROIMAGE

Minimal specifications for non-human primate MRI: Challenges in standardizing and harmonizing data collection

(2021) Joonas A. Autio et al.   NEUROIMAGE

Genetic influences on hub connectivity of the human connectome

(2021) Aurina Arnatkeviciute et al.   Nature Communications

Lowering the thermal noise barrier in functional brain mapping with magnetic resonance imaging

(2021) Luca Vizioli et al.   Nature Communications

Extensive sampling for complete models of individual brains

(2021) Thomas Naselaris et al.   Current Opinion in Behavioral Sciences

Accelerating the Evolution of Nonhuman Primate Neuroimaging

(2020) Michael Milham et al.   NEURON

A Domain-General Cognitive Core Defined in Multimodally Parcellated Human Cortex

(2020) Moataz Assem et al.   CEREBRAL CORTEX

Variability in the analysis of a single neuroimaging dataset by many teams

(2020) Rotem Botvinik-Nezer et al.   NATURE

Optimising network modelling methods for fMRI

(2020) Usama Pervaiz et al.   NEUROIMAGE

The UK Biobank imaging enhancement of 100,000 participants: rationale, data collection, management and future directions

(2020) Thomas J. Littlejohns et al.   Nature Communications

XTRACT - Standardised protocols for automated tractography in the human and macaque brain

(2020) Shaun Warrington et al.   NEUROIMAGE

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing

(2020) Joonas A. Autio et al.   NEUROIMAGE

The ABCD study: understanding the development of risk for mental and physical health outcomes

(2020) Nicole R. Karcher et al.   NEUROPSYCHOPHARMACOLOGY

Parcel-guided rTMS for depression

(2020) M. Moreno-Ortega et al.   Translational Psychiatry

Polygenic evidence and overlapped brain functional connectivities for the association between chronic pain and sleep disturbance

(2020) Jie Sun et al.   Translational Psychiatry

Brain connections derived from diffusion MRI tractography can be highly anatomically accurate—if we know where white matter pathways start, where they end, and where they do not go

(2020) Kurt G. Schilling et al.   Brain Structure & Function

The Mind of a Mouse

(2020) Larry F. Abbott et al.   CELL

A connectome and analysis of the adult Drosophila central brain

(2020) Louis K Scheffer et al.   eLife

Highly accelerated submillimeter resolution 3D GRASE with controlled blurring in ‐weighted functional MRI at 7 Tesla: A feasibility study

(2020) Suhyung Park et al.   MAGNETIC RESONANCE IN MEDICINE

The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants

(2020) Sean P. Fitzgibbon et al.   NEUROIMAGE

Uncertainty modelling in deep learning for safer neuroimage enhancement: Demonstration in diffusion MRI

(2020) Ryutaro Tanno et al.   NEUROIMAGE

Modelling white matter in gyral blades as a continuous vector field

(2020) Michiel Cottaar et al.   NEUROIMAGE

Rapid Precision Functional Mapping of Individuals Using Multi-Echo fMRI

(2020) Charles J. Lynch et al.   Cell Reports

NOise reduction with DIstribution Corrected (NORDIC) PCA in dMRI with complex-valued parameter-free locally low-rank processing

(2020) Steen Moeller et al.   NEUROIMAGE

A collaborative resource platform for non-human primate neuroimaging

(2020) Adam Messinger et al.   NEUROIMAGE

Hierarchical Heterogeneity across Human Cortex Shapes Large-Scale Neural Dynamics

(2019) Murat Demirtaş et al.   NEURON

Optimizing BOLD sensitivity in the 7T Human Connectome Project resting-state fMRI protocol using plug-and-play parallel transmission

(2019) Vincent Gras et al.   NEUROIMAGE

Ciftify: A framework for surface-based analysis of legacy MR acquisitions

(2019) Erin W. Dickie et al.   NEUROIMAGE

Brainstorm Pipeline Analysis of Resting-State Data From the Open MEG Archive

(2019) Guiomar Niso et al.   Frontiers in Neuroscience

Whole-animal connectomes of both Caenorhabditis elegans sexes

(2019) Steven J. Cook et al.   NATURE

Resting brain dynamics at different timescales capture distinct aspects of human behavior

(2019) Raphaël Liégeois et al.   Nature Communications

Mitigating Gyral Bias in Cortical Tractography via Asymmetric Fiber Orientation Distributions

(2019) Ye Wu et al.   MEDICAL IMAGE ANALYSIS

Global signal regression strengthens association between resting-state functional connectivity and behavior

(2019) Jingwei Li et al.   NEUROIMAGE

In vivo human head MRI at 10.5T: A radiofrequency safety study and preliminary imaging results

(2019) Alireza Sadeghi‐Tarakameh et al.   MAGNETIC RESONANCE IN MEDICINE

Combining multiple connectomes improves predictive modeling of phenotypic measures

(2019) Siyuan Gao et al.   NEUROIMAGE

Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

(2019) Donald J. Hagler et al.   NEUROIMAGE

Evidence for association between familial bipolar risk and ventral striatal volume

(2018) T.M. Lancaster   JOURNAL OF AFFECTIVE DISORDERS

Functional segmentation of the anterior limb of the internal capsule: linking white matter abnormalities to specific connections.

(2018) Ziad Safadi et al.   JOURNAL OF NEUROSCIENCE

High-resolution whole-brain diffusion MRI at 7T using radiofrequency parallel transmission

(2018) Xiaoping Wu et al.   MAGNETIC RESONANCE IN MEDICINE

Joint Estimation of Effective Brain Wave Activation Modes Using EEG/MEG Sensor Arrays and Multimodal MRI Volumes

(2018) Vitaly L. Galinsky et al.   NEURAL COMPUTATION

Concurrent white matter bundles and grey matter networks using independent component analysis

(2018) Jonathan O'Muircheartaigh et al.   NEUROIMAGE

Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data

(2018) Jesper L.R. Andersson et al.   NEUROIMAGE

Evaluation of SLIce Dithered Enhanced Resolution Simultaneous MultiSlice (SLIDER-SMS) for human fMRI

(2018) An T. Vu et al.   NEUROIMAGE

Robust is not necessarily reliable: From within-subjects fMRI contrasts to between-subjects comparisons

(2018) Zachary P. Infantolino et al.   NEUROIMAGE

Surface-enhanced tractography (SET)

(2018) Etienne St-Onge et al.   NEUROIMAGE

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction

(2018) Antonios Makropoulos et al.   NEUROIMAGE

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project

(2018) Matteo Bastiani et al.   NEUROIMAGE

Dorsal and ventral cortices are coupled by cross-frequency interactions during working memory

(2018) Tzvetan Popov et al.   NEUROIMAGE

Multimodal surface matching with higher-order smoothness constraints

(2018) Emma C. Robinson et al.   NEUROIMAGE

The UNC/UMN Baby Connectome Project (BCP): An overview of the study design and protocol development

(2018) Brittany R. Howell et al.   NEUROIMAGE

Ridding fMRI data of motion-related influences: Removal of signals with distinct spatial and physical bases in multiecho data

(2018) Jonathan D. Power et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of traditional neuroimaging methods on the spatial localization of cortical areas

(2018) Timothy S. Coalson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Task-induced brain state manipulation improves prediction of individual traits

(2018) Abigail S. Greene et al.   Nature Communications

Introduction

(2018) Terry L. Jernigan et al.   Developmental Cognitive Neuroscience

The Adolescent Brain Cognitive Development (ABCD) study: Imaging acquisition across 21 sites

(2018) B.J. Casey et al.   Developmental Cognitive Neuroscience

The conception of the ABCD study: From substance use to a broad NIH collaboration

(2018) Nora D. Volkow et al.   Developmental Cognitive Neuroscience

Whole brain comparative anatomy using connectivity blueprints

(2018) Rogier B Mars et al.   eLife

MEG-BIDS, the brain imaging data structure extended to magnetoencephalography

(2018) Guiomar Niso et al.   Scientific Data

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data

(2018) Matthew F. Glasser et al.   NEUROIMAGE

The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5–21 year olds

(2018) Leah H. Somerville et al.   NEUROIMAGE

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction

(2018) Matteo Bastiani et al.   NEUROIMAGE

Extending the human connectome project across ages: Imaging protocols for the Lifespan development and aging projects

(2018) Michael P. Harms et al.   NEUROIMAGE

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans

(2018) David C. Van Essen et al.   NEURON

Derivation of Fiber Orientations From Oblique Views Through Human Brain Sections in 3D-Polarized Light Imaging

(2018) Daniel Schmitz et al.   Frontiers in Neuroanatomy

The Human Connectome Project 7 Tesla retinotopy dataset: Description and population receptive field analysis

(2018) Noah C. Benson et al.   JOURNAL OF VISION

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

Human Connectome Project-style resting-state functional MRI at 7 Tesla using radiofrequency parallel transmission

(2018) Xiaoping Wu et al.   NEUROIMAGE

The Lifespan Human Connectome Project in Aging: An overview

(2018) Susan Y. Bookheimer et al.   NEUROIMAGE

Genetic Predisposition vs Individual-Specific Processes in the Association Between Psychotic-like Experiences and Cannabis Use

(2018) Nicole R. Karcher et al.   JAMA Psychiatry

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes

(2018) Moises Hernandez-Fernandez et al.   NEUROIMAGE

Perceived stress is associated with increased rostral middle frontal gyrus cortical thickness: a family-based and discordant-sibling investigation

(2017) L. J. Michalski et al.   GENES BRAIN AND BEHAVIOR

Confirmation of a gyral bias in diffusion MRI fiber tractography

(2017) Kurt Schilling et al.   HUMAN BRAIN MAPPING

An integrated brain–behavior model for working memory

(2017) D A Moser et al.   MOLECULAR PSYCHIATRY

Best practices in data analysis and sharing in neuroimaging using MRI

(2017) Thomas E Nichols et al.   NATURE NEUROSCIENCE

Image quality transfer and applications in diffusion MRI

(2017) Daniel C. Alexander et al.   NEUROIMAGE

HIgh b -value and high Resolution Integrated Diffusion (HIBRID) imaging

(2017) Qiuyun Fan et al.   NEUROIMAGE

Improved tractography using asymmetric fibre orientation distributions

(2017) Matteo Bastiani et al.   NEUROIMAGE

The Brain Analysis Library of Spatial maps and Atlases (BALSA) database

(2017) David C. Van Essen et al.   NEUROIMAGE

Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement

(2017) Jesper L.R. Andersson et al.   NEUROIMAGE

Sources and implications of whole-brain fMRI signals in humans

(2017) Jonathan D. Power et al.   NEUROIMAGE

Precision Functional Mapping of Individual Human Brains

(2017) Evan M. Gordon et al.   NEURON

Building connectomes using diffusion MRI: why, how and but

(2017) Stamatios N. Sotiropoulos et al.   NMR IN BIOMEDICINE

The challenge of mapping the human connectome based on diffusion tractography

(2017) Klaus H. Maier-Hein et al.   Nature Communications

Test-retest reliability of longitudinal task-based fMRI: Implications for developmental studies

(2017) Megan M. Herting et al.   Developmental Cognitive Neuroscience

The heritability of multi-modal connectivity in human brain activity

(2017) Giles L Colclough et al.   eLife

Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey

(2016) Chad J. Donahue et al.   JOURNAL OF NEUROSCIENCE

A dedicated neonatal brain imaging system

(2016) Emer J. Hughes et al.   MAGNETIC RESONANCE IN MEDICINE

A multi-modal parcellation of human cerebral cortex

(2016) Matthew F. Glasser et al.   NATURE

The Human Connectome Project's neuroimaging approach

(2016) Matthew F Glasser et al.   NATURE NEUROSCIENCE

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging

(2016) Jesper L.R. Andersson et al.   NEUROIMAGE

Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project

(2016) Stamatios N. Sotiropoulos et al.   NEUROIMAGE

Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images

(2016) Jesper L. R Andersson et al.   NEUROIMAGE

ConnectomeDB—Sharing human brain connectivity data

(2016) Michael R. Hodge et al.   NEUROIMAGE

Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates

(2016) Anders Eklund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Task-free MRI predicts individual differences in brain activity during task performance

(2016) I. Tavor et al.   SCIENCE

Sleep duration and resting fMRI functional connectivity: examination of short sleepers with and without perceived daytime dysfunction

(2016) Brian J. Curtis et al.   Brain and Behavior

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

A positive-negative mode of population covariation links brain connectivity, demographics and behavior

(2015) Stephen M Smith et al.   NATURE NEUROSCIENCE

Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity

(2015) Emily S Finn et al.   NATURE NEUROSCIENCE

High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project

(2015) A.T. Vu et al.   NEUROIMAGE

Recent progress and outstanding issues in motion correction in resting state fMRI

(2015) Jonathan D. Power et al.   NEUROIMAGE

Functional System and Areal Organization of a Highly Sampled Individual Human Brain

(2015) Timothy O. Laumann et al.   NEURON

Architectonic Mapping of the Human Brain beyond Brodmann

(2015) Katrin Amunts et al.   NEURON

Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography

(2015) Colin Reveley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term neural and physiological phenotyping of a single human

(2015) Russell A. Poldrack et al.   Nature Communications

Probabilistic Maps of Visual Topography in Human Cortex

(2014) Liang Wang et al.   CEREBRAL CORTEX

Generation and Evaluation of a Cortical Area Parcellation from Resting-State Correlations

(2014) Evan M. Gordon et al.   CEREBRAL CORTEX

Reliability and Validity of Composite Scores from the NIH Toolbox Cognition Battery in Adults

(2014) Robert K. Heaton et al.   JOURNAL OF THE INTERNATIONAL NEUROPSYCHOLOGICAL SOCIETY

Group-PCA for very large fMRI datasets

(2014) Stephen M. Smith et al.   NEUROIMAGE

Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers

(2014) Gholamreza Salimi-Khorshidi et al.   NEUROIMAGE

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

(2014) Ben Jeurissen et al.   NEUROIMAGE

MSM: A new flexible framework for Multimodal Surface Matching

(2014) Emma C. Robinson et al.   NEUROIMAGE

Permutation inference for the general linear model

(2014) Anderson M. Winkler et al.   NEUROIMAGE

Intrinsic and Task-Evoked Network Architectures of the Human Brain

(2014) Michael W. Cole et al.   NEURON

MEG and EEG data analysis with MNE-Python

(2014) Alexandre Gramfort   Frontiers in Neuroscience

Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: Reducing the noise floor using SENSE

(2013) S. N. Sotiropoulos et al.   MAGNETIC RESONANCE IN MEDICINE

Resting-state fMRI in the Human Connectome Project

(2013) Stephen M. Smith et al.   NEUROIMAGE

Human Connectome Project informatics: Quality control, database services, and data visualization

(2013) Daniel S. Marcus et al.   NEUROIMAGE

Evaluation of slice accelerations using multiband echo planar imaging at 3T

(2013) Junqian Xu et al.   NEUROIMAGE

Pushing the limits of in vivo diffusion MRI for the Human Connectome Project

(2013) K. Setsompop et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Adding dynamics to the Human Connectome Project with MEG

(2013) L.J. Larson-Prior et al.   NEUROIMAGE

Function in the human connectome: Task-fMRI and individual differences in behavior

(2013) Deanna M. Barch et al.   NEUROIMAGE

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Advances in diffusion MRI acquisition and processing in the Human Connectome Project

(2013) Stamatios N. Sotiropoulos et al.   NEUROIMAGE

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project

(2013) Kamil Uğurbil et al.   NEUROIMAGE

Methods to detect, characterize, and remove motion artifact in resting state fMRI

(2013) Jonathan D. Power et al.   NEUROIMAGE

Trends and properties of human cerebral cortex: Correlations with cortical myelin content

(2013) Matthew F. Glasser et al.   NEUROIMAGE

NIH Toolbox for Assessment of Neurological and Behavioral Function

(2013) R. C. Gershon et al.   NEUROLOGY

Motor assessment using the NIH Toolbox

(2013) D. B. Reuben et al.   NEUROLOGY

Cognition assessment using the NIH Toolbox

(2013) S. Weintraub et al.   NEUROLOGY

A 64-channel 3T array coil for accelerated brain MRI

(2012) Boris Keil et al.   MAGNETIC RESONANCE IN MEDICINE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

Obscuring Surface Anatomy in Volumetric Imaging Data

(2012) Mikhail Milchenko et al.   NEUROINFORMATICS

Temporally-independent functional modes of spontaneous brain activity

(2012) S. M. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cortical Parcellations of the Macaque Monkey Analyzed on Surface-Based Atlases

(2011) D. C. Van Essen et al.   CEREBRAL CORTEX

Parcellations and Hemispheric Asymmetries of Human Cerebral Cortex Analyzed on Surface-Based Atlases

(2011) D. C. Van Essen et al.   CEREBRAL CORTEX

Mapping Human Cortical Areas In Vivo Based on Myelin Content as Revealed by T1- and T2-Weighted MRI

(2011) M. F. Glasser et al.   JOURNAL OF NEUROSCIENCE

Blipped-controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g-factor penalty

(2011) Kawin Setsompop et al.   MAGNETIC RESONANCE IN MEDICINE

Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI

(2011) M. Dylan Tisdall et al.   MAGNETIC RESONANCE IN MEDICINE

Diffusion tractography of post-mortem human brains: Optimization and comparison of spin echo and steady-state free precession techniques

(2011) Karla L. Miller et al.   NEUROIMAGE

Brainstorm: A User-Friendly Application for MEG/EEG Analysis

(2011) François Tadel et al.   Computational Intelligence and Neuroscience

How reliable are the results from functional magnetic resonance imaging?

(2010) Craig M. Bennett et al.   Annals of the New York Academy of Sciences

Assessment of neurological and behavioural function: the NIH Toolbox

(2010) Richard C Gershon et al.   LANCET NEUROLOGY

Multiband multislice GE-EPI at 7 tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI

(2010) Steen Moeller et al.   MAGNETIC RESONANCE IN MEDICINE

Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging

(2010) David A. Feinberg et al.   PLoS One

Toward discovery science of human brain function

(2010) B. B. Biswal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data

(2010) Robert Oostenveld et al.   Computational Intelligence and Neuroscience

Facial Recognition From Volume-Rendered Magnetic Resonance Imaging Data

(2009) F.W. Prior et al.   IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE

Accurate and robust brain image alignment using boundary-based registration

(2009) Douglas N. Greve et al.   NEUROIMAGE

High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession

(2009) Jennifer A. McNab et al.   NEUROIMAGE

Defining functional areas in individual human brains using resting functional connectivity MRI

(2008) Alexander L. Cohen et al.   NEUROIMAGE

Neurobehavioral mechanisms of impulsivity: Fronto-striatal systems and functional neurochemistry

(2007) Jeffrey W. Dalley et al.   PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR