Cellular anatomy of the mouse primary motor cortex

Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections

(2021) Yu-Chi Sun et al.   NATURE NEUROSCIENCE

Visualizing anatomically registered data with brainrender

(2021) Federico Claudi et al.   eLife

Morphological diversity of single neurons in molecularly defined cell types

(2021) Hanchuan Peng et al.   NATURE

A multimodal cell census and atlas of the mammalian primary motor cortex

(2021) et al.   NATURE

Genetic dissection of the glutamatergic neuron system in cerebral cortex

(2021) Katherine S. Matho et al.   NATURE

Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH

(2021) Meng Zhang et al.   NATURE

A Robust Image Registration Interface for Large Volume Brain Atlas

(2020) Hong Ni et al.   Scientific Reports

Operations research methods for estimating the population size of neuron types

(2020) Sarojini M. Attili et al.   ANNALS OF OPERATIONS RESEARCH

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population

(2020) Euiseok J. Kim et al.   NEURON

Anatomically revealed morphological patterns of pyramidal neurons in layer 5 of the motor cortex

(2020) Siqi Jiang et al.   Scientific Reports

DeepBrainSeg: Automated Brain Region Segmentation for Micro-Optical Images With a Convolutional Neural Network

(2020) Chaozhen Tan et al.   Frontiers in Neuroscience

An open access mouse brain flatmap and upgraded rat and human brain flatmaps based on current reference atlases

(2020) Joel D. Hahn et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice

(2020) Matthew B. Veldman et al.   NEURON

Linking axon morphology to gene expression: a strategy for neuronal cell-type classification

(2020) Johan Winnubst et al.   CURRENT OPINION IN NEUROBIOLOGY

Connectional architecture of a mouse hypothalamic circuit node controlling social behavior

(2019) Liching Lo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A whole-brain atlas of monosynaptic input targeting four different cell types in the medial prefrontal cortex of the mouse

(2019) Sofie Ährlund-Richter et al.   NATURE NEUROSCIENCE

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain

(2019) Johan Winnubst et al.   CELL

High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

(2019) Xiaoyin Chen et al.   CELL

Hierarchical organization of cortical and thalamic connectivity

(2019) Julie A. Harris et al.   NATURE

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

(2019) Yimin Wang et al.   Nature Communications

Enhanced and unified anatomical labeling for a common mouse brain atlas

(2019) Uree Chon et al.   Nature Communications

Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor

(2018) Megan Crow et al.   Nature Communications

An open repository for single-cell reconstructions of the brain forest

(2018) Masood A. Akram et al.   Scientific Data

Topographic precision in sensory and motor corticostriatal projections varies across cell type and cortical area

(2018) Bryan M. Hooks et al.   Nature Communications

Distinct descending motor cortex pathways and their roles in movement

(2018) Michael N. Economo et al.   NATURE

A community-developed open-source computational ecosystem for big neuro data

(2018) Joshua T. Vogelstein et al.   NATURE METHODS

Automatic tracing of ultra-volumes of neuronal images

(2017) Hanchuan Peng et al.   NATURE METHODS

Selective inhibitory control of pyramidal neuron ensembles and cortical subnetworks by chandelier cells

(2017) Jiangteng Lu et al.   NATURE NEUROSCIENCE

AAV-Mediated Anterograde Transsynaptic Tagging: Mapping Corticocollicular Input-Defined Neural Pathways for Defense Behaviors

(2017) Brian Zingg et al.   NEURON

Embedding and Chemical Reactivation of Green Fluorescent Protein in the Whole Mouse Brain for Optical Micro-Imaging

(2017) Yadong Gang et al.   Frontiers in Neuroscience

Metrics for comparing neuronal tree shapes based on persistent homology

(2017) Yanjie Li et al.   PLoS One

Genetically-directed Sparse Neuronal Labeling in BAC Transgenic Mice through Mononucleotide Repeat Frameshift

(2017) Xiao-Hong Lu et al.   Scientific Reports

From Cajal to Connectome and Beyond

(2016) Larry W. Swanson et al.   Annual Review of Neuroscience

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes

(2016) Nicolas Renier et al.   CELL

A multi-modal parcellation of human cerebral cortex

(2016) Matthew F. Glasser et al.   NATURE

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images

(2016) Alessandro Bria et al.   NATURE METHODS

The mouse cortico-striatal projectome

(2016) Houri Hintiryan et al.   NATURE NEUROSCIENCE

Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex

(2016) Miao He et al.   NEURON

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

(2016) Hui Gong et al.   Nature Communications

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

(2015) Leonard Kuan et al.   METHODS

Viral-genetic tracing of the input–output organization of a central noradrenaline circuit

(2015) Lindsay A. Schwarz et al.   NATURE

High-performance probes for light and electron microscopy

(2015) Sarada Viswanathan et al.   NATURE METHODS

The neocortical circuit: themes and variations

(2015) Kenneth D Harris et al.   NATURE NEUROSCIENCE

Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse

(2015) Yongsoo Kim et al.   Cell Reports

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

Brainstem nucleus MdV mediates skilled forelimb motor tasks

(2014) Maria Soledad Esposito et al.   NATURE

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

How the brainstem controls orofacial behaviors comprised of rhythmic actions

(2014) Jeffrey D. Moore et al.   TRENDS IN NEUROSCIENCES

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

(2014) Julie A. Harris et al.   Frontiers in Neural Circuits

Statistical analysis and data mining of digital reconstructions of dendritic morphologies

(2014) Sridevi Polavaram et al.   Frontiers in Neuroanatomy

Spatiotemporal Dynamics of Functional Clusters of Neurons in the Mouse Motor Cortex during a Voluntary Movement

(2013) R. Hira et al.   JOURNAL OF NEUROSCIENCE

Organization of Cortical and Thalamic Input to Pyramidal Neurons in Mouse Motor Cortex

(2013) B. M. Hooks et al.   JOURNAL OF NEUROSCIENCE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

GENSAT BAC Cre-Recombinase Driver Lines to Study the Functional Organization of Cerebral Cortical and Basal Ganglia Circuits

(2013) Charles R. Gerfen et al.   NEURON

The Subthalamic Nucleus Is One of Multiple Innervation Sites for Long-Range Corticofugal Axons: A Single-Axon Tracing Study in the Rat

(2012) T. Kita et al.   JOURNAL OF NEUROSCIENCE

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex

(2011) Hiroki Taniguchi et al.   NEURON

Digital Atlasing and Standardization in the Mouse Brain

(2011) Michael Hawrylycz et al.   PLoS Computational Biology

The Organization of the Forelimb Representation of the C57BL/6 Mouse Motor Cortex as Defined by Intracortical Microstimulation and Cytoarchitecture

(2010) Kelly A. Tennant et al.   CEREBRAL CORTEX

Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture

(2010) L. W. Swanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monosynaptic circuit tracing in vivo through Cre-dependent targeting and complementation of modified rabies virus

(2010) N. R. Wall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE

Intracortical cartography in an agranular area

(2010) Gordon M. G. Shepherd   Frontiers in Neuroscience

elastix: A Toolbox for Intensity-Based Medical Image Registration

(2009) S. Klein et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Quantifying neuronal size: Summing up trees and splitting the branch difference

(2008) K BROWN et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY