DeepBrainSeg: Automated Brain Region Segmentation for Micro-Optical Images With a Convolutional Neural Network

An active texture-based digital atlas enables automated mapping of structures and markers across brains

(2019) Yuncong Chen et al.   NATURE METHODS

DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs

(2018) Liang-Chieh Chen et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

VoxResNet: Deep voxelwise residual networks for brain segmentation from 3D MR images

(2018) Hao Chen et al.   NEUROIMAGE

SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation

(2017) Vijay Badrinarayanan et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

A survey on deep learning in medical image analysis

(2017) Geert Litjens et al.   MEDICAL IMAGE ANALYSIS

Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review

(2017) Waseem Rawat et al.   NEURAL COMPUTATION

Generation of a whole-brain atlas for the cholinergic system and mesoscopic projectome analysis of basal forebrain cholinergic neurons

(2017) Xiangning Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Precise Cerebral Vascular Atlas in Stereotaxic Coordinates of Whole Mouse Brain

(2017) Benyi Xiong et al.   Frontiers in Neuroanatomy

A Quantitative Analysis of the Distribution of CRH Neurons in Whole Mouse Brain

(2017) Jie Peng et al.   Frontiers in Neuroanatomy

Brain Tumor Segmentation Using Convolutional Neural Networks in MRI Images

(2016) Sergio Pereira et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Automatic Segmentation of MR Brain Images With a Convolutional Neural Network

(2016) Pim Moeskops et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

(2016) Hui Gong et al.   Nature Communications

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

(2015) Leonard Kuan et al.   METHODS

Deep learning

(2015) Yann LeCun et al.   NATURE

CIDRE: an illumination-correction method for optical microscopy

(2015) Kevin Smith et al.   NATURE METHODS

Deep learning in neural networks: An overview

(2015) Jürgen Schmidhuber   NEURAL NETWORKS

Wavelet statistical texture features-based segmentation and classification of brain computed tomography images

(2013) A. Padma Nanthagopal et al.   IET Image Processing

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Review of brain MRI image segmentation methods

(2010) M. A. Balafar et al.   ARTIFICIAL INTELLIGENCE REVIEW

Waxholm Space: An image-based reference for coordinating mouse brain research

(2010) G. Allan Johnson et al.   NEUROIMAGE

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS