Global RNA interactome of Salmonella discovers a 5′ UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Global RNA interactome of Salmonella discovers a 5′ UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity
Authors
Keywords
RIL-seq, Salmonella, RNA sponges, MicF, oppA, envelope cross-talk
Journal
MOLECULAR CELL
Volume 82, Issue 3, Pages 629-644.e4
Publisher
Elsevier BV
Online
2022-01-20
DOI
10.1016/j.molcel.2021.12.030
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping
- (2021) Philip P Adams et al. eLife
- MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT
- (2021) Sara Correia Santos et al. Cell Reports
- Prediction of Novel Bacterial Small RNAs From RIL-Seq RNA–RNA Interaction Data
- (2021) Amir Bar et al. Frontiers in Microbiology
- The Sponge RNAs of bacteria – How to find them and their role in regulating the post-transcriptional network
- (2020) Emma L. Denham Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation
- (2020) Ira Alexandra Iosub et al. eLife
- Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
- (2020) Milan Gerovac et al. RNA
- Gene autoregulation by 3’ UTR-derived bacterial small RNAs
- (2020) Mona Hoyos et al. eLife
- Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
- (2020) Jens Hör et al. NUCLEIC ACIDS RESEARCH
- Early termination of the Shiga toxin transcript generates a regulatory small RNA
- (2020) Brandon M. Sy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- YshB promotes intracellular replication and is required for Salmonella virulence
- (2019) Rajdeep Bomjan et al. JOURNAL OF BACTERIOLOGY
- The sRNA PinT contributes to PhoP-mediated regulation of the SPI1 T3SS in Salmonella enterica serovar Typhimurium
- (2019) Kyungsub Kim et al. JOURNAL OF BACTERIOLOGY
- RNA-RNA Interactomes of ProQ and Hfq Reveal Overlapping and Competing Roles
- (2019) Sahar Melamed et al. MOLECULAR CELL
- Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria
- (2019) Julia Vergalli et al. NATURE REVIEWS MICROBIOLOGY
- Bacterial RNA Biology on a Genome Scale
- (2018) Jens Hör et al. MOLECULAR CELL
- Freiburg RNA tools: a central online resource for RNA-focused research and teaching
- (2018) Martin Raden et al. NUCLEIC ACIDS RESEARCH
- The small protein MgtS and small RNA MgrR modulate the PitA phosphate symporter to boost intracellular magnesium levels
- (2018) Xuefeng Yin et al. MOLECULAR MICROBIOLOGY
- In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways
- (2017) Yanjie Chao et al. MOLECULAR CELL
- Probing the sRNA regulatory landscape of P. aeruginosa : post-transcriptional control of determinants of pathogenicity and antibiotic susceptibility
- (2017) Yi-Fan Zhang et al. MOLECULAR MICROBIOLOGY
- Mapping the small RNA interactome in bacteria using RIL-seq
- (2017) Sahar Melamed et al. Nature Protocols
- Envelope Stress Responses: An Interconnected Safety Net
- (2017) Marcin Grabowicz et al. TRENDS IN BIOCHEMICAL SCIENCES
- Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo
- (2016) Erik Holmqvist et al. EMBO JOURNAL
- The Phosphorolytic Exoribonucleases Polynucleotide Phosphorylase and RNase PH Stabilize sRNAs and Facilitate Regulation of Their mRNA Targets
- (2016) Todd A. Cameron et al. JOURNAL OF BACTERIOLOGY
- Global Mapping of Small RNA-Target Interactions in Bacteria
- (2016) Sahar Melamed et al. MOLECULAR CELL
- A 3′ UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response
- (2016) Yanjie Chao et al. MOLECULAR CELL
- Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
- (2016) Alexander J. Westermann et al. NATURE
- Grad-seq guides the discovery of ProQ as a major small RNA-binding protein
- (2016) Alexandre Smirnov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The CpxQ sRNA Negatively Regulates Skp To Prevent Mistargeting of β-Barrel Outer Membrane Proteins into the Cytoplasmic Membrane
- (2016) Marcin Grabowicz et al. mBio
- A lipoprotein/β-barrel complex monitors lipopolysaccharide integrity transducing information across the outer membrane
- (2016) Anna Konovalova et al. eLife
- GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation
- (2016) Kook Han et al. Nature Microbiology
- Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
- (2015) M. Miyakoshi et al. EMBO JOURNAL
- A 3′ External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise
- (2015) David Lalaouna et al. MOLECULAR CELL
- Interactions between Distant ceRNAs in Regulatory Networks
- (2014) Mor Nitzan et al. BIOPHYSICAL JOURNAL
- Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
- (2014) Gene-Wei Li et al. CELL
- Salmonellae PhoPQ regulation of the outer membrane to resist innate immunity
- (2014) Zachary D Dalebroux et al. CURRENT OPINION IN MICROBIOLOGY
- Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli
- (2014) Jai J. Tree et al. MOLECULAR CELL
- Everything old is new again: An update on current research on the Cpx envelope stress response
- (2013) Tracy L. Raivio BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Small RNA-Mediated Activation of Sugar Phosphatase mRNA Regulates Glucose Homeostasis
- (2013) Kai Papenfort et al. CELL
- An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium
- (2013) Carsten Kröger et al. Cell Host & Microbe
- An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
- (2012) Yanjie Chao et al. EMBO JOURNAL
- Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA
- (2012) Colin P. Corcoran et al. MOLECULAR MICROBIOLOGY
- A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp
- (2012) Erik Holmqvist et al. MOLECULAR MICROBIOLOGY
- A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
- (2011) Leonardo Salmena et al. CELL
- RNIE: genome-wide prediction of bacterial intrinsic terminators
- (2011) P. P. Gardner et al. NUCLEIC ACIDS RESEARCH
- The small RNA SgrS controls sugar–phosphate accumulation by regulating multiple PTS genes
- (2011) Jennifer B. Rice et al. NUCLEIC ACIDS RESEARCH
- Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
- (2011) E. B. Gogol et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MicA sRNA links the PhoP regulon to cell envelope stress
- (2010) Audrey Coornaert et al. MOLECULAR MICROBIOLOGY
- The Bacterial Cell Envelope
- (2010) T. J. Silhavy et al. Cold Spring Harbor Perspectives in Biology
- Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target
- (2009) N. Figueroa-Bossi et al. GENES & DEVELOPMENT
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Switching off small RNA regulation with trap-mRNA
- (2009) Martin Overgaard et al. MOLECULAR MICROBIOLOGY
- A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides
- (2009) Kyung Moon et al. MOLECULAR MICROBIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now