Integrated application of multi-omics strategies provides insights into the environmental hypoxia response in Pelteobagrus vachelli muscle

Comparative analysis of liver transcriptomes associated with hypoxia tolerance in the gynogenetic blunt snout bream

(2020) Dingbin Gong et al.   AQUACULTURE

Assessing Urinary Metabolomics in Giant Pandas Using Chromatography/Mass Spectrometry: Pregnancy-Related Changes in the Metabolome

(2020) Maosheng Cao et al.   Frontiers in Endocrinology

Integrated analysis of transcriptomic, miRNA and proteomic changes of a novel hybrid yellow catfish uncovers key roles for miRNAs in heterosis

(2019) Guosong Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Integrated application of multi-omics provides insights into cold stress responses in pufferfish Takifugu fasciatus

(2019) Xin Wen et al.   BMC GENOMICS

Twenty years of the ‘Preparation for Oxidative Stress’ (POS) theory: Ecophysiological advantages and molecular strategies

(2019) Maximiliano Giraud-Billoud et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Paeonol protects mitochondrial injury and prevents pulmonary vascular remodeling in hypoxia

(2019) Dapeng Wang et al.   RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY

Comparative transcriptome analysis of the swimbladder reveals expression signatures in response to low oxygen stress in channel catfish, Ictalurus punctatus.

(2018) Yujia Yang et al.   PHYSIOLOGICAL GENOMICS

Integrated metabolomic and transcriptomic analysis of brain energy metabolism in the male Oriental river prawn (Macrobrachium nipponense) in response to hypoxia and reoxygenation

(2018) Shengming Sun et al.   ENVIRONMENTAL POLLUTION

The role of mitochondria in NLRP3 inflammasome activation

(2018) Qiuyun Liu et al.   MOLECULAR IMMUNOLOGY

Zebrafish let-7b acts downstream of hypoxia-inducible factor-1α to assist in hypoxia-mediated cell proliferation and cell cycle regulation

(2017) Chun-Xiao Huang et al.   LIFE SCIENCES

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Comparative iTRAQ-Based Quantitative Proteomic Analysis of Pelteobagrus vachelli Liver under Acute Hypoxia: Implications in Metabolic Responses

(2017) Guosong Zhang et al.   PROTEOMICS

Integrated analysis of mRNA and miRNA expression profiles in livers of Yimeng black pigs with extreme phenotypes for backfat thickness

(2017) Wentong Li et al.   Oncotarget

Rapamycin regulates macrophage activation by inhibiting NLRP3 inflammasome-p38 MAPK-NFκB pathways in autophagy- and p62-dependent manners

(2017) Jung Hwa Ko et al.   Oncotarget

Dynamic mRNA and miRNA expression analysis in response to hypoxia and reoxygenation in the blunt snout bream (Megalobrama amblycephala)

(2017) Shengming Sun et al.   Scientific Reports

Hepatic transcriptomic and metabolic responses of hybrid striped bass ( Morone saxatilis × Morone chrysops ) to acute and chronic hypoxic insult

(2016) Benjamin H. Beck et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Copper and hypoxia modulate transcriptional and mitochondrial functional-biochemical responses in warm acclimated rainbow trout (Oncorhynchus mykiss)

(2016) Ravinder Sappal et al.   ENVIRONMENTAL POLLUTION

Acute hypoxia up-regulates HIF-1α and VEGF mRNA levels in Amazon hypoxia-tolerant Oscar (Astronotus ocellatus)

(2016) R. B. Baptista et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Cell cycle inhibition reduces inflammatory responses, neuronal loss, and cognitive deficits induced by hypobaria exposure following traumatic brain injury

(2016) Jacob W. Skovira et al.   Journal of Neuroinflammation

Integrated analysis of mRNA-seq and miRNA-seq in the liver of Pelteobagrus vachelli in response to hypoxia

(2016) Guosong Zhang et al.   Scientific Reports

Molecular characterization and mRNA expression of HIF-prolyl hydroxylase-2 (phd2) in hypoxia-sensing pathways from Megalobrama amblycephala

(2015) Huijuan Wang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

FO007VICIOUS CIRCLE OF NLRP3 AND MITOCHONDRIAL DAMAGE PLAYS CENTRAL ROLE IN RENAL ISCHEMIA REPERFUSION INJURY

(2015) Wen Yi et al.   NEPHROLOGY DIALYSIS TRANSPLANTATION

The hypoxia signaling pathway and hypoxic adaptation in fishes

(2015) Wuhan Xiao   Science China-Life Sciences

Transcriptional regulation of hypoxia inducible factors alpha (HIF-α) and their inhibiting factor (FIH-1) of channel catfish (Ictalurus punctatus) under hypoxia

(2014) Xin Geng et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Divergent transcriptional patterns are related to differences in hypoxia tolerance between the intertidal and the subtidal sculpins

(2014) Milica Mandic et al.   MOLECULAR ECOLOGY

Molecular Response of Estuarine Fish to Hypoxia: A Comparative Study with Ruffe and Flounder from Field and Laboratory

(2014) Jessica Tiedke et al.   PLoS One

Polyhydroxylated Metallofullerenols Stimulate IL-1β Secretion of Macrophage through TLRs/MyD88/NF-κB Pathway and NLRP3Inflammasome Activation

(2014) Zhiyun Chen et al.   Small

Effect of hypercapnic hypoxia and bacterial infection (Vibrio campbellii) on protein synthesis rates in the Pacific whiteleg shrimp, Litopenaeus vannamei

(2013) Kristin M. Hardy et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Strategies for hypoxia adaptation in fish species: a review

(2013) Chang-Dong Zhu et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

1H-NMR study of the metabolome of a moderately hypoxia-tolerant fish, the common carp (Cyprinus carpio)

(2013) Isabelle Lardon et al.   Metabolomics

Quantitative Proteomics Reveals the Temperature-Dependent Proteins Encoded by a Series of Cluster Genes inThermoanaerobacter Tengcongensis

(2013) Zhen Chen et al.   MOLECULAR & CELLULAR PROTEOMICS

MicroRNA-338 regulates the axonal expression of multiple nuclear-encoded mitochondrial mRNAs encoding subunits of the oxidative phosphorylation machinery

(2012) Armaz Aschrafi et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Molecular characterization and expression analysis of three hypoxia-inducible factor alpha subunits, HIF-1α/2α/3α of the hypoxia-sensitive freshwater species, Chinese sucker

(2012) Nan Chen et al.   GENE

Time-dependent changes in protein expression in rainbow trout muscle following hypoxia

(2012) Tune Wulff et al.   Journal of Proteomics

Hypoxia-induced changes in the zebrafish (Danio rerio) skeletal muscle proteome

(2012) Kan Chen et al.   Journal of Proteomics

Human Trifunctional Protein Alpha Links Cardiolipin Remodeling to Beta-Oxidation

(2012) William A. Taylor et al.   PLoS One

The effect of short-term hypoxic exposure on metabolic gene expression

(2011) Meredith V. Everett et al.   Journal of Experimental Zoology Part A-Ecological Genetics and Physiology

Invited review: decoding the microRNA response to hypoxia

(2011) Roger Pocock   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Energy metabolism in hypoxia: reinterpreting some features of muscle physiology on molecular grounds

(2010) Paolo Cerretelli et al.   EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY

A role for mitochondria in NLRP3 inflammasome activation

(2010) Rongbin Zhou et al.   NATURE

Compensatory proteome adjustments imply tissue-specific structural and metabolic reorganization following episodic hypoxia or anoxia in the epaulette shark (Hemiscyllium ocellatum)

(2010) W. Wesley Dowd et al.   PHYSIOLOGICAL GENOMICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis

(2009) Jennifer S Guimbellot et al.   BMC Medical Genomics

Proteomic changes in the crucian carp brain during exposure to anoxia

(2009) Richard W. Smith et al.   PROTEOMICS

Identification and characterization of hypoxia-induced genes in Carassius auratus blastulae embryonic cells using suppression subtractive hybridization

(2008) Xue-Ping Zhong et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS