Allelically and Differentially Expressed Genes After Infection of Edwardsiella ictaluri in Channel Catfish as Determined by Bulk Segregant RNA-Seq

Molecular characterization of adult plant resistance loci against powdery mildew in winter wheat cultivar Liangxing 99 using BSR-Seq technology

(2021) Xiaohan Shi et al.   PLANT DISEASE

Sex-Specific Transcriptome Sequencing of Zoea I Larvae and Identification of Sex-Linked Genes Using Bulked Segregant Analysis in Pacific White Shrimp Litopenaeus vannamei

(2020) Yue Wang et al.   MARINE BIOTECHNOLOGY

Identification of a Recessive Gene PmQ Conferring Resistance to Powdery Mildew in Wheat Landrace Qingxinmai Using BSR-Seq Analysis

(2019) Yahui Li et al.   PLANT DISEASE

GWAS analysis using interspecific backcross progenies reveals superior blue catfish alleles responsible for strong resistance against enteric septicemia of catfish

(2018) Suxu Tan et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association analysis of intra-specific QTL associated with the resistance for enteric septicemia of catfish

(2018) Huitong Shi et al.   MOLECULAR GENETICS AND GENOMICS

Priming of dendritic cells by DNA-containing extracellular vesicles from activated T cells through antigen-driven contacts

(2018) Daniel Torralba et al.   Nature Communications

Catfish Biology and Farming

(2018) Rex A. Dunham et al.   Annual Review of Animal Biosciences

Identification of SNPs associated with residual feed intake from the muscle of Litopenaeus vannamei using bulk segregant RNA-seq

(2018) Ping Dai et al.   AQUACULTURE

A Review of Molecular Responses of Catfish to Bacterial Diseases and Abiotic Stresses

(2018) Tao Zhou et al.   Frontiers in Physiology

Toward Identification of Black Lemma and Pericarp Gene Blp1 in Barley Combining Bulked Segregant Analysis and Specific-Locus Amplified Fragment Sequencing

(2017) Qiaojun Jia et al.   Frontiers in Plant Science

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Transcriptome profiling of grass carp ( Ctenopharyngodon idellus ) infected with Aeromonas hydrophila

(2016) Ying Yang et al.   FISH & SHELLFISH IMMUNOLOGY

A transcriptome resource for pharaoh cuttlefish ( Sepia pharaonis ) after ink ejection by brief pressing

(2016) Jing Wen et al.   Marine Genomics

GWAS analysis of QTL for enteric septicemia of catfish and their involved genes suggest evolutionary conservation of a molecular mechanism of disease resistance

(2016) Tao Zhou et al.   MOLECULAR GENETICS AND GENOMICS

Paired Ig-Like Type 2 Receptor-Derived Agonist Ligands Ameliorate Inflammatory Reactions by Downregulating β1 Integrin Activity

(2016) Kyoung-Jin Lee et al.   MOLECULES AND CELLS

Immunology in the liver — from homeostasis to disease

(2016) Felix Heymann et al.   Nature Reviews Gastroenterology & Hepatology

Xkr8 phospholipid scrambling complex in apoptotic phosphatidylserine exposure

(2016) Jun Suzuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

Rapid Identification of Candidate Genes for Seed Weight Using the SLAF-Seq Method in Brassica napus

(2016) Xinxin Geng et al.   PLoS One

Identification of Genes Potentially Associated with the Fertility Instability of S-Type Cytoplasmic Male Sterility in Maize via Bulked Segregant RNA-Seq

(2016) Aiguo Su et al.   PLoS One

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

Trancriptomic profiling revealed the signatures of acute immune response in tilapia (Oreochromis niloticus) following Streptococcus iniae challenge

(2015) Jiajie Zhu et al.   FISH & SHELLFISH IMMUNOLOGY

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

(2014) Y. Li et al.   DNA RESEARCH

Using next-generation sequencing to isolate mutant genes from forward genetic screens

(2014) Korbinian Schneeberger   NATURE REVIEWS GENETICS

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat

(2014) Ricardo H. Ramirez-Gonzalez et al.   PLANT BIOTECHNOLOGY JOURNAL

The complex transcriptional landscape of the anucleate human platelet

(2013) Paul F Bray et al.   BMC GENOMICS

The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens

(2013) Daniela Gomez et al.   FISH & SHELLFISH IMMUNOLOGY

RNA-seq-based mapping and candidate identification of mutations from forward genetic screens

(2013) A. C. Miller et al.   GENOME RESEARCH

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(2013) J. T. Hill et al.   GENOME RESEARCH

Variation in temperature tolerance among families of Atlantic salmon (Salmo salar) is associated with hypoxia tolerance, ventricle size and myoglobin level

(2013) K. Anttila et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Xk-Related Protein 8 and CED-8 Promote Phosphatidylserine Exposure in Apoptotic Cells

(2013) J. Suzuki et al.   SCIENCE

Biogeography of the ecosystems of the healthy human body

(2013) Yanjiao Zhou et al.   GENOME BIOLOGY

RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus

(2012) Chao Li et al.   FISH & SHELLFISH IMMUNOLOGY

Use of Vaccination against Enteric Septicemia of Catfish and Columnaris Disease by the U.S. Catfish Industry

(2012) Julie Bebak et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

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(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)

(2012) Sanzhen Liu et al.   PLoS One

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis

(2010) Tim van Zutphen et al.   BMC GENOMICS

Transcriptome analysis of rainbow trout infected with high and low virulence strains of Infectious hematopoietic necrosis virus

(2010) Maureen K. Purcell et al.   FISH & SHELLFISH IMMUNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Apolipoprotein A-I from striped bass (Morone saxatilis) demonstrates antibacterial activity in vitro

(2008) L. Danielle Johnston et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions

(2008) Brian C. Small et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Transcriptome Analyses of Amoebic Gill Disease-affected Atlantic Salmon (Salmo salar) Tissues Reveal Localized Host Gene Suppression

(2008) James W. Wynne et al.   MARINE BIOTECHNOLOGY