SAT: a Surrogate-Assisted Two-wave case boosting sampling method, with application to EHR-based association studies

Optimal Sampling for Generalized Linear Models Under Measurement Constraints

(2020) Tao Zhang et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

sureLDA: A multidisease automated phenotyping method for the electronic health record

(2020) Yuri Ahuja et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

PheMap: a multi-resource knowledge base for high-throughput phenotyping within electronic health records

(2020) Neil S Zheng et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

High-throughput multimodal automated phenotyping (MAP) with application to PheWAS

(2019) Katherine P Liao et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

How many rare diseases are there?

(2019) Melissa Haendel et al.   NATURE REVIEWS DRUG DISCOVERY

A study on the effects of unbalanced data when fitting logistic regression models in ecology

(2018) Christian Salas-Eljatib et al.   ECOLOGICAL INDICATORS

Replication of progressive supranuclear palsy genome-wide association study identifies SLCO1A2 and DUSP10 as new susceptibility loci

(2018) Monica Y. Sanchez-Contreras et al.   Molecular Neurodegeneration

Enabling phenotypic big data with PheNorm

(2017) Sheng Yu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Optimal Subsampling for Large Sample Logistic Regression

(2017) HaiYing Wang et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Surrogate-assisted feature extraction for high-throughput phenotyping

(2016) Sheng Yu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Learning statistical models of phenotypes using noisy labeled training data

(2016) Vibhu Agarwal et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Real-World Evidence — What Is It and What Can It Tell Us?

(2016) Rachel E. Sherman et al.   NEW ENGLAND JOURNAL OF MEDICINE

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

(2015) Sheng Yu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Local case-control sampling: Efficient subsampling in imbalanced data sets

(2014) William Fithian et al.   ANNALS OF STATISTICS

A unification of models for meta-analysis of diagnostic accuracy studies without a gold standard

(2014) Yulun Liu et al.   BIOMETRICS

Comparative safety of cardiovascular medication use and breast cancer outcomes among women with early stage breast cancer

(2014) Denise M. Boudreau et al.   BREAST CANCER RESEARCH AND TREATMENT

Genome- and Phenome-Wide Analyses of Cardiac Conduction Identifies Markers of Arrhythmia Risk

(2013) Marylyn D. Ritchie et al.   CIRCULATION

Electronic health records-driven phenotyping: challenges, recent advances, and perspectives

(2013) Jyotishman Pathak et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

The Role of Balanced Training and Testing Data Sets for Binary Classifiers in Bioinformatics

(2013) Qiong Wei et al.   PLoS One

Class-imbalanced classifiers for high-dimensional data

(2012) W.-J. Lin et al.   BRIEFINGS IN BIOINFORMATICS

Administrative Data Algorithms to Identify Second Breast Cancer Events Following Early-Stage Invasive Breast Cancer

(2012) Jessica Chubak et al.   JNCI-Journal of the National Cancer Institute

Mining electronic health records: towards better research applications and clinical care

(2012) Peter B. Jensen et al.   NATURE REVIEWS GENETICS

Validation Data-based Adjustments for Outcome Misclassification in Logistic Regression

(2011) Robert H. Lyles et al.   EPIDEMIOLOGY

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study

(2011) Abel N Kho et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy

(2011) Günter U Höglinger et al.   NATURE GENETICS

Robust Replication of Genotype-Phenotype Associations across Multiple Diseases in an Electronic Medical Record

(2010) Marylyn D. Ritchie et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Sensitivity analysis for misclassification in logistic regression via likelihood methods and predictive value weighting

(2010) Robert H. Lyles et al.   STATISTICS IN MEDICINE

Random Effects Models in a Meta-Analysis of the Accuracy of Two Diagnostic Tests Without a Gold Standard

(2009) Haitao Chu et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Using Technology to Promote Gastrointestinal Outcomes Research: A Case for Electronic Health Records

(2008) Ashish Atreja et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY