Electronic health records-driven phenotyping: challenges, recent advances, and perspectives
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Title
Electronic health records-driven phenotyping: challenges, recent advances, and perspectives
Authors
Keywords
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Journal
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
Volume 20, Issue e2, Pages e206-e211
Publisher
Oxford University Press (OUP)
Online
2013-12-03
DOI
10.1136/amiajnl-2013-002428
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Note: Only part of the references are listed.- Implementing the Learning Health System: From Concept to Action
- (2013) Sarah M. Greene et al. ANNALS OF INTERNAL MEDICINE
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- (2013) Omri Gottesman et al. GENETICS IN MEDICINE
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- (2013) Jeremy L Warner et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) S Trent Rosenbloom et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Weiyi Sun et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- An adaptable architecture for patient cohort identification from diverse data sources
- (2013) Richard Bache et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Evaluating temporal relations in clinical text: 2012 i2b2 Challenge
- (2013) Weiyi Sun et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Enhancing patient safety and quality of care by improving the usability of electronic health record systems: recommendations from AMIA
- (2013) B. Middleton et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- À la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge
- (2013) Colin Cherry et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Towards comprehensive syntactic and semantic annotations of the clinical narrative
- (2013) Daniel Albright et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text
- (2013) Kirk Roberts et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury
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- (2013) Jesualdo Tomás Fernández-Breis et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Jonas F Ludvigsson et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Svetlana Lyalina et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Mary Regina Boland et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Yan Xu et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Jeffrey G Klann et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Buzhou Tang et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) George Hripcsak et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Terrence Y Tian et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Yukun Chen et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Electronic health records based phenotyping in next-generation clinical trials: a perspective from the NIH Health Care Systems Collaboratory: Table 1
- (2013) Rachel L Richesson et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- e-Measures: insight into the challenges and opportunities of automating publicly reported quality measures
- (2013) Terhilda Garrido et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2013) Yan Xu et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) Andreea Bodnari et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) Henry Ware et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) M. G. Kahn et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) M. J. Feldman et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) Vijay N Garla et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) Qi Li et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) Justin A Strauss et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) G. Hripcsak et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2012) David A Hanauer et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database
- (2012) J. F. Hurdle et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Personal medicine—the new banking crisis
- (2012) Christopher Thomas Scott et al. NATURE BIOTECHNOLOGY
- Chapter 13: Mining Electronic Health Records in the Genomics Era
- (2012) Joshua C. Denny PLoS Computational Biology
- Variants Near FOXE1 Are Associated with Hypothyroidism and Other Thyroid Conditions: Using Electronic Medical Records for Genome- and Phenome-wide Studies
- (2011) Joshua C. Denny et al. AMERICAN JOURNAL OF HUMAN GENETICS
- The eMERGE Network: A consortium of biorepositories linked to electronic medical records data for conducting genomic studies
- (2011) Catherine A McCarty et al. BMC Medical Genomics
- Assessing the reproducibility of asthma genome-wide association studies in a general clinical population
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- A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries
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- (2011) Guergana K Savova et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Accuracy of a computerized clinical decision-support system for asthma assessment and management
- (2011) Laura J Hoeksema et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) B. L. Strom et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Targeted screening for pediatric conditions with the CHICA system
- (2011) Aaron E Carroll et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- A knowledge discovery and reuse pipeline for information extraction in clinical notes
- (2011) Jon D Patrick et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Evaluation of computer-generated reminders to improve CD4 laboratory monitoring in sub-Saharan Africa: a prospective comparative study
- (2011) M. C. Were et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- The feasibility of automating audit and feedback for ART guideline adherence in Malawi
- (2011) Zach Landis Lewis et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Nikki M Carroll et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Hybrid methods for improving information access in clinical documents: concept, assertion, and relation identification
- (2011) Anne-Lyse Minard et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- MITRE system for clinical assertion status classification
- (2011) Cheryl Clark et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- The impact of the heparin-induced thrombocytopenia (HIT) computerized alert on provider behaviors and patient outcomes
- (2011) Jonathan S Austrian et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Kai Zheng et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Leonard W D'Avolio et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin
- (2011) Hua Xu et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Effectiveness of an information technology intervention to improve prophylactic antibacterial use in the postoperative period
- (2011) K. Haynes et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Early cost and safety benefits of an inpatient electronic health record
- (2011) J. A. Zlabek et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Adam Wright et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Manabu Torii et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) D. P. Connelly et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Joyce C Niland et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Abel N Kho et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- The impact of an electronic health record on nurse sensitive patient outcomes: an interrupted time series analysis
- (2011) D. W. Dowding et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Richard T Griffey et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Exploiting domain information for Word Sense Disambiguation of medical documents
- (2011) Mark Stevenson et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- Implementation of an innovative, integrated electronic medical record (EMR) and public health information exchange for HIV/AIDS
- (2011) J. Herwehe et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2011) Suzette J. Bielinski et al. MAYO CLINIC PROCEEDINGS
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- (2009) G. M. Weber et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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- (2009) Bryndis Yngvadottir et al. GENOME BIOLOGY
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- (2008) DM Roden et al. CLINICAL PHARMACOLOGY & THERAPEUTICS
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- (2007) G. K. Savova et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
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