Enabling phenotypic big data with PheNorm

EHR-based phenotyping: Bulk learning and evaluation

(2017) Po-Hsiang Chiu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Clinical phenotyping in selected national networks: demonstrating the need for high-throughput, portable, and computational methods

(2016) Rachel L. Richesson et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

Million Veteran Program: A mega-biobank to study genetic influences on health and disease

(2016) John Michael Gaziano et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Learning statistical models of phenotypes using noisy labeled training data

(2016) Vibhu Agarwal et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Electronic medical record phenotyping using the anchor and learn framework

(2016) Yoni Halpern et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Large-scale identification of patients with cerebral aneurysms using natural language processing

(2016) Victor M. Castro et al.   NEUROLOGY

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

(2015) Sheng Yu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Deep phenotyping: The details of disease

(2015) Cathryn M. Delude   NATURE

Identification of subjects with polycystic ovary syndrome using electronic health records

(2015) Victor Castro et al.   Reproductive Biology and Endocrinology

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

(2015) K. P. Liao et al.   BMJ-British Medical Journal

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

(2015) K. P. Liao et al.   BMJ-British Medical Journal

Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts

(2015) Katherine P. Liao et al.   PLoS One

Improving the power of genetic association tests with imperfect phenotype derived from electronic medical records

(2014) Jennifer A. Sinnott et al.   HUMAN GENETICS

Classification of CT pulmonary angiography reports by presence, chronicity, and location of pulmonary embolism with natural language processing

(2014) Sheng Yu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Improving Case Definition of Crohnʼs Disease and Ulcerative Colitis in Electronic Medical Records Using Natural Language Processing

(2013) Ashwin N. Ananthakrishnan et al.   INFLAMMATORY BOWEL DISEASES

Applying active learning to high-throughput phenotyping algorithms for electronic health records data

(2013) Yukun Chen et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Electronic health records-driven phenotyping: challenges, recent advances, and perspectives

(2013) Jyotishman Pathak et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Modeling Disease Severity in Multiple Sclerosis Using Electronic Health Records

(2013) Zongqi Xia et al.   PLoS One

Pneumonia identification using statistical feature selection

(2012) Cosmin Adrian Bejan et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Next-generation phenotyping of electronic health records

(2012) G. Hripcsak et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

The eMERGE Network: A consortium of biorepositories linked to electronic medical records data for conducting genomic studies

(2011) Catherine A McCarty et al.   BMC Medical Genomics

A method and knowledge base for automated inference of patient problems from structured data in an electronic medical record

(2011) Adam Wright et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text

(2011) Özlem Uzuner et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Using electronic health records to drive discovery in disease genomics

(2011) Isaac S. Kohane   NATURE REVIEWS GENETICS

Robust Replication of Genotype-Phenotype Associations across Multiple Diseases in an Electronic Medical Record

(2010) Marylyn D. Ritchie et al.   AMERICAN JOURNAL OF HUMAN GENETICS

PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations

(2010) J. C. Denny et al.   BIOINFORMATICS

Identification of Genomic Predictors of Atrioventricular Conduction

(2010) Joshua C. Denny et al.   CIRCULATION

An automated technique for identifying associations between medications, laboratory results and problems

(2010) Adam Wright et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications

(2010) Guergana K Savova et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Phenomics: the next challenge

(2010) David Houle et al.   NATURE REVIEWS GENETICS

A Genome-Wide Association Study of Red Blood Cell Traits Using the Electronic Medical Record

(2010) Iftikhar J. Kullo et al.   PLoS One

Electronic medical records for discovery research in rheumatoid arthritis

(2010) Katherine P. Liao et al.   ARTHRITIS CARE & RESEARCH

On the adaptive elastic-net with a diverging number of parameters

(2009) Hui Zou et al.   ANNALS OF STATISTICS

Instrumenting the health care enterprise for discovery research in the genomic era

(2009) S. Murphy et al.   GENOME RESEARCH

Development of a Large-Scale De-Identified DNA Biobank to Enable Personalized Medicine

(2008) DM Roden et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS