Functional soil mycobiome across ecosystems

High-throughput sequencing view on the magnitude of global fungal diversity

(2021) Petr Baldrian et al.   FUNGAL DIVERSITY

Soil microbial diversity–biomass relationships are driven by soil carbon content across global biomes

(2021) Felipe Bastida et al.   ISME Journal

The structure and function of soil archaea across biomes

(2021) Robert Starke et al.   Journal of Proteomics

Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach

(2021) Robert Starke et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structure and function of bacterial metaproteomes across biomes

(2021) F. Bastida et al.   SOIL BIOLOGY & BIOCHEMISTRY

Explorative Meta-Analysis of 377 Extant Fungal Genomes Predicted a Total Mycobiome Functionality of 42.4 Million KEGG Functions

(2020) Robert Starke et al.   Frontiers in Microbiology

FungalRoot: global online database of plant mycorrhizal associations

(2020) Nadejda A. Soudzilovskaia et al.   NEW PHYTOLOGIST

Changes in belowground biodiversity during ecosystem development

(2019) Manuel Delgado-Baquerizo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A few Ascomycota taxa dominate soil fungal communities worldwide

(2019) Eleonora Egidi et al.   Nature Communications

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer

(2019) Robert Heyer et al.   Frontiers in Microbiology

Global ecological predictors of the soil priming effect

(2019) Felipe Bastida et al.   Nature Communications

Global mycorrhizal plant distribution linked to terrestrial carbon stocks

(2019) Nadejda A. Soudzilovskaia et al.   Nature Communications

A meta-analysis of global fungal distribution reveals climate-driven patterns

(2019) Tomáš Větrovský et al.   Nature Communications

The total microbiome functions in bacteria and fungi

(2019) Robert Starke et al.   Journal of Proteomics

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography

(2018) Stephen J. Callister et al.   SOIL BIOLOGY & BIOCHEMISTRY

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Differential sensitivity of total and active soil microbial communities to drought and forest management

(2017) Felipe Bastida et al.   GLOBAL CHANGE BIOLOGY

Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach

(2017) Robert Starke et al.   Scientific Reports

The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment

(2016) F. Bastida et al.   Journal of Proteomics

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils

(2016) Felipe Bastida et al.   MOLECULAR ECOLOGY

Quantifying global soil carbon losses in response to warming

(2016) T. W. Crowther et al.   NATURE

Bacteria dominate the short-term assimilation of plant-derived N in soil

(2016) Robert Starke et al.   SOIL BIOLOGY & BIOCHEMISTRY

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relationship between soil fungal diversity and temperature in the maritime Antarctic

(2015) Kevin K. Newsham et al.   Nature Climate Change

Metaproteomics of soils from semiarid environment: Functional and phylogenetic information obtained with different protein extraction methods

(2014) F. Bastida et al.   Journal of Proteomics

Correction: A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2014) Linda A. Amaral-Zettler et al.   PLoS One

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

(2014) Robert Riley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

(2013) Martin von Bergen et al.   ISME Journal

Phylogenetic and phylogenomic overview of the Polyporales

(2013) Manfred Binder et al.   MYCOLOGIA

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Biogeography of ectomycorrhizal fungi associated with alders (Alnusspp.) in relation to biotic and abiotic variables at the global scale

(2013) Sergei Põlme et al.   NEW PHYTOLOGIST

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

High throughput phospholipid fatty acid analysis of soils

(2012) Jeffrey S. Buyer et al.   APPLIED SOIL ECOLOGY

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Differential Utilization of Carbon Substrates by Bacteria and Fungi in Tundra Soil

(2009) R. Rinnan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modelling and predicting fungal distribution patterns using herbarium data

(2008) Anders K. Wollan et al.   JOURNAL OF BIOGEOGRAPHY