Phylogenetic and Ancestral Sequence Reconstruction of SARS-CoV-2 Reveals Latent Capacity to Bind Human ACE2 Receptor

V367F Mutation in SARS-CoV-2 Spike RBD Emerging during the Early Transmission Phase Enhances Viral Infectivity through Increased Human ACE2 Receptor Binding Affinity

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Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2

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Outbreak of pneumonia of unknown etiology in Wuhan, China: The mystery and the miracle

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Accelerated viral dynamics in bat cell lines, with implications for zoonotic emergence

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Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses

(2020) Michael Letko et al.   Nature Microbiology

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

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SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor

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Probable Pangolin Origin of SARS-CoV-2 Associated with the COVID-19 Outbreak

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Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event

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Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

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Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

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The proximal origin of SARS-CoV-2

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Cell entry mechanisms of SARS-CoV-2

(2020) Jian Shang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV

(2020) Xiuyuan Ou et al.   Nature Communications

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

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Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species

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Evolutionary arms race between virus and host drives genetic diversity in bat SARS related coronavirus spike genes

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Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

(2020) Maciej F. Boni et al.   Nature Microbiology

In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges

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Interactive Tree Of Life (iTOL) v4: recent updates and new developments

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Coronavirus envelope protein: current knowledge

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Virus–Host Coevolution with a Focus on Animal and Human DNA Viruses

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Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

(2019) Gloria Yang et al.   Nature Chemical Biology

Serological Evidence of Bat SARS-Related Coronavirus Infection in Humans, China

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Evolution and Emergence of Pathogenic Viruses: Past, Present, and Future

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Database resources of the National Center for Biotechnology Information

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A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence

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Five challenges in evolution and infectious diseases

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Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Investigating the zoonotic origin of the West African Ebola epidemic

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g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor

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Evolutionary biochemistry: revealing the historical and physical causes of protein properties

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FastML: a web server for probabilistic reconstruction of ancestral sequences

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Mechanisms of Coronavirus Cell Entry Mediated by the Viral Spike Protein

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ProtTest 3: fast selection of best-fit models of protein evolution

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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

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Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

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An Improved General Amino Acid Replacement Matrix

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Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice

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