Synthetically engineered microbial scavengers for enhanced bioremediation

Genetically Engineered Methanotroph as a Platform for Bioaugmentation of Chemical Pesticide Contaminated Soil

(2021) Yongchuang Liu et al.   ACS Synthetic Biology

Enhancing Microbial Pollutant Degradation by Integrating Eco-Evolutionary Principles with Environmental Biotechnology

(2021) Erik Borchert et al.   TRENDS IN MICROBIOLOGY

Rediverting Electron Flux with an Engineered CRISPR-ddAsCpf1 System to Enhance the Pollutant Degradation Capacity of Shewanella oneidensis

(2020) Jie Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Reduction of chromium-VI by chromium-resistant Escherichia coli FACU: a prospective bacterium for bioremediation

(2020) Mahmoud S.M. Mohamed et al.   FOLIA MICROBIOLOGICA

User guide for the discovery of potential drugs via protein structure prediction and ligand docking simulation

(2020) Bilal Shaker et al.   JOURNAL OF MICROBIOLOGY

Growth of E. coli on formate and methanol via the reductive glycine pathway

(2020) Seohyoung Kim et al.   Nature Chemical Biology

Challenges of unculturable bacteria: environmental perspectives

(2020) Attila Bodor et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Protein Engineering for Improving and Diversifying Natural Product Biosynthesis

(2020) Chenyi Li et al.   TRENDS IN BIOTECHNOLOGY

High-Throughput Screening Technology in Industrial Biotechnology

(2020) Weizhu Zeng et al.   TRENDS IN BIOTECHNOLOGY

Petroleum-Tolerant Rhizospheric Bacteria: Isolation, Characterization and Bioremediation Potential

(2020) Jéssica Aparecida Viesser et al.   Scientific Reports

A safety type of genetically engineered bacterium that degrades chemical pesticides

(2020) Qin Li et al.   AMB Express

Global Sulfur Dioxide Emissions and the Driving Forces

(2020) Qirui Zhong et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Saturation mutagenesis to improve the degradation of azo dyes by versatile peroxidase and application in form of VP-coated yeast cell walls

(2020) Karla Ilić Đurđić et al.   ENZYME AND MICROBIAL TECHNOLOGY

A complete route for biodegradation of potentially carcinogenic cyanotoxin microcystin-LR in a novel indigenous bacterium

(2020) Fei Yang et al.   WATER RESEARCH

Thermophilic whole‐cell degradation of polyethylene terephthalate using engineered Clostridium thermocellum

(2020) Fei Yan et al.   Microbial Biotechnology

Mechanism of allethrin biodegradation by a newly isolated Sphingomonas trueperi strain CW3 from wastewater sludge

(2020) Pankaj Bhatt et al.   BIORESOURCE TECHNOLOGY

Converting Escherichia coli to a Synthetic Methylotroph Growing Solely on Methanol

(2020) Frederic Y.-H. Chen et al.   CELL

Microbial degradation of two highly persistent fluorinated fungicides - epoxiconazole and fludioxonil

(2020) Diogo A.M. Alexandrino et al.   JOURNAL OF HAZARDOUS MATERIALS

Global impact of atmospheric arsenic on health risk: 2005 to 2015

(2020) Lei Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two radical-dependent mechanisms for anaerobic degradation of the globally abundant organosulfur compound dihydroxypropanesulfonate

(2020) Jiayi Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation

(2020) Shany Ofaim et al.   Scientific Reports

Kinetics of Phenol Biodegradation by Heavy Metal Tolerant Rhizobacteria Glutamicibacter nicotianae MSSRFPD35 From Distillery Effluent Contaminated Soils

(2020) Purushothaman Duraisamy et al.   Frontiers in Microbiology

Adaptive laboratory evolution enhances methanol tolerance and conversion in engineered Corynebacterium glutamicum

(2020) Yu Wang et al.   Communications Biology

Functional and structural analyses for MlrC enzyme of Novosphingobium sp. THN1 in microcystin-biodegradation: Involving optimized heterologous expression, bioinformatics and site-directed mutagenesis

(2020) Ruiping Wang et al.   CHEMOSPHERE

Genetically engineered thermotolerant facultative anaerobes for high-efficient degradation of multiple hazardous nitroalkanes

(2020) Bingling Zhang et al.   JOURNAL OF HAZARDOUS MATERIALS

Development of an efficient pathway construction strategy for rapid evolution of the biodegradation capacity of Pseudomonas putida KT2440 and its application in bioremediation

(2020) Yuxin Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Horizontal ‘gene drives’ harness indigenous bacteria for bioremediation

(2020) Katherine E. French et al.   Scientific Reports

Leveraging Oxidative Stress to Regulate Redox Balance-Based, In Vivo Growth Selections for Oxygenase Engineering

(2020) Sarah Maxel et al.   ACS Synthetic Biology

Tunable Gene Expression System Independent of Downstream Coding Sequence

(2020) Seung Min Yoo et al.   ACS Synthetic Biology

Degradation and detoxification of azo dyes with recombinant ligninolytic enzymes from Aspergillus sp. with secretory overexpression in Pichia pastoris

(2020) Siqi Liu et al.   Royal Society Open Science

Engineering a microbial ‘trap and release’ mechanism for microplastics removal

(2020) Sylvia Yang Liu et al.   CHEMICAL ENGINEERING JOURNAL

Remediation of different nitroaromatic pollutants by a promising agent of Cupriavidus sp. strain a3

(2020) Jyoti Tiwari et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

A novel pathway for initial biotransformation of dinitroaniline herbicide butralin from a newly isolated bacterium Sphingopyxis sp. strain HMH

(2020) Sunil Ghatge et al.   JOURNAL OF HAZARDOUS MATERIALS

Microbial degradation of hydrophobic emerging contaminants from marine sediment slurries (Capbreton Canyon) to pure bacterial strain

(2020) Alyssa Azaroff et al.   JOURNAL OF HAZARDOUS MATERIALS

Combinatorial metabolic pathway assembly approaches and toolkits for modular assembly

(2020) Rosanna Young et al.   METABOLIC ENGINEERING

Bioengineering of non-pathogenic Escherichia coli to enrich for accumulation of environmental copper

(2020) Dharmender K. Gahlot et al.   Scientific Reports

Transcription profiling-guided remodeling of sulfur metabolism in synthetic bacteria for efficiently capturing heavy metals

(2020) Jinpeng Liu et al.   JOURNAL OF HAZARDOUS MATERIALS

Potential human health risks due to environmental exposure to nano- and microplastics and knowledge gaps: A scoping review

(2020) Arifur Rahman et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Development of a dual-antimicrobial counterselection method for markerless genetic engineering of bacterial genomes

(2019) Xuemeng Ji et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microplastics in the marine environment: Current trends in environmental pollution and mechanisms of toxicological profile

(2019) Chibuisi Gideon Alimba et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

The health and social implications of household air pollution and respiratory diseases

(2019) Suzanne M. Simkovich et al.   npj Primary Care Respiratory Medicine

Uptake and adverse effects of polyethylene terephthalate microplastics fibers on terrestrial snails (Achatina fulica) after soil exposure

(2019) Yang Song et al.   ENVIRONMENTAL POLLUTION

Construction of an Escherichia coli strain to degrade phenol completely with two modified metabolic modules

(2019) Bo Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

Construction of genetic logic gates based on the T7 RNA polymerase expression system in Rhodococcus opacus PD630

(2019) Drew DeLorenzo et al.   ACS Synthetic Biology

Biofilm Formation by Hydrocarbon-Degrading Marine Bacteria and its Effects on Oil Dispersion

(2019) Marzhana Omarova et al.   ACS Sustainable Chemistry & Engineering

Polyethylene Terephthalate and Polycarbonate Microplastics in Pet Food and Feces from the United States

(2019) Junjie Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A new uranium bioremediation approach using radio-tolerant Deinococcus radiodurans biofilm

(2019) T Manobala et al.   JOURNAL OF BIOSCIENCES

A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630

(2019) Garrett W. Roell et al.   METABOLIC ENGINEERING

Synthetic microbial consortium with specific roles designated by genetic circuits for cooperative chemical production

(2019) Hiroshi Honjo et al.   METABOLIC ENGINEERING

Common principles and best practices for engineering microbiomes

(2019) Christopher E. Lawson et al.   NATURE REVIEWS MICROBIOLOGY

The Third Generation of Artificial Dye-Decolorizing Peroxidase Rationally Designed in Myoglobin

(2019) Ping Zhang et al.   ACS Catalysis

Enhancing Bioremediation Potential of Pseudomonas putida by Developing Its Acid Stress Tolerance With Glutamate Decarboxylase Dependent System and Global Regulator of Extreme Radiation Resistance

(2019) Zikang Zhou et al.   Frontiers in Microbiology

Conversion of Escherichia coli to Generate All Biomass Carbon from CO2

(2019) Shmuel Gleizer et al.   CELL

Exploring the genetic potential of a fosmid metagenomic library from an oil-impacted mangrove sediment for metabolism of aromatic compounds

(2019) Sanderson Tarciso Pereira de Sousa et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Bioremediation potential of a halophilic Halobacillus sp. strain, EG1HP4QL: exopolysaccharide production, crude oil degradation, and heavy metal tolerance

(2019) Ibrahim M. Ibrahim et al.   EXTREMOPHILES

Using a marine microalga as a chassis for polyethylene terephthalate (PET) degradation

(2019) Daniel Moog et al.   Microbial Cell Factories

Modular enzyme assembly for enhanced cascade biocatalysis and metabolic flux

(2019) Wei Kang et al.   Nature Communications

Particulate matter-attributable mortality and relationships with carbon dioxide in 250 urban areas worldwide

(2019) Susan C. Anenberg et al.   Scientific Reports

Comprehensive genomic analysis of an indigenous Pseudomonas pseudoalcaligenes degrading phenolic compounds

(2019) Maryam Safari et al.   Scientific Reports

Metabolic profile analysis and kinetics of p-cresol biodegradation by an indigenous Pseudomonas citronellolis NS1 isolated from coke oven wastewater

(2019) Namita Panigrahy et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Evaluation of seven chemical pesticides by mixed microbial culture (PCS-1): Degradation ability, microbial community, and Medicago sativa phytotoxicity

(2019) Haiyun Li et al.   JOURNAL OF HAZARDOUS MATERIALS

Remediation of soil and water contaminated with petroleum hydrocarbon: A review

(2019) Innocent Chukwunonso Ossai et al.   Environmental Technology & Innovation

Removal enactment of organo-phosphorous pesticide using bacteria isolated from domestic sewage

(2018) Md. Shabbir et al.   BIORESOURCE TECHNOLOGY

Hybrid phenolic-inducible promoters towards construction of self-inducible systems for microbial lignin valorization

(2018) Arul M. Varman et al.   Biotechnology for Biofuels

Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium

(2018) Pagakrong Wanapaisan et al.   JOURNAL OF HAZARDOUS MATERIALS

Methanol assimilation in Escherichia coli is improved by co-utilization of threonine and deletion of leucine-responsive regulatory protein

(2018) Jacqueline E. Gonzalez et al.   METABOLIC ENGINEERING

Natural Attenuation Potential of Polychlorinated Biphenyl-Polluted Marine Sediments

(2018) Sarah Aldhafiri et al.   Polish Journal of Microbiology

Metabolic division of labor in microbial systems

(2018) Ryan Tsoi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methanol-essential growth of Escherichia coli

(2018) Fabian Meyer et al.   Nature Communications

Developing a Synthetic Biology Toolkit for Comamonas testosteroni, an Emerging Cellular Chassis for Bioremediation

(2018) Qiang Tang et al.   ACS Synthetic Biology

Synthetic gene circuits for the detection, elimination and prevention of disease

(2018) Ferdinand Sedlmayer et al.   Nature Biomedical Engineering

Adaptive laboratory evolution of cadmium tolerance in Synechocystis sp. PCC 6803

(2018) Chunxiao Xu et al.   Biotechnology for Biofuels

Exploring bacterial communities and biodegradation genes in activated sludge from pesticide wastewater treatment plants via metagenomic analysis

(2018) Hua Fang et al.   ENVIRONMENTAL POLLUTION

Synthetic methanol auxotrophy of Escherichia coli for methanol-dependent growth and production

(2018) Chang-Ting Chen et al.   METABOLIC ENGINEERING

Petroleum Hydrocarbon-Degrading Bacteria for the Remediation of Oil Pollution Under Aerobic Conditions: A Perspective Analysis

(2018) Xingjian Xu et al.   Frontiers in Microbiology

Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology

(2018) Nicholas S. McCarty et al.   TRENDS IN BIOTECHNOLOGY

Toxicity of aromatic pollutants and photooxidative intermediates in water: A QSAR study

(2018) Matija Cvetnic et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Microbial communities in pesticide-contaminated soils in Kyrgyzstan and bioremediation possibilities

(2017) Tinatin Doolotkeldieva et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Biodegradation of crude oil and phenanthrene by heavy metal resistant Bacillus subtilis isolated from a multi-polluted industrial wastewater creek

(2017) Ganiyu Oladunjoye Oyetibo et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Biodegradation of γ-hexachlorocyclohexane (lindane) by halophilic bacterium Chromohalobacter sp. LD2 isolated from HCH dumpsite

(2017) Swati Bajaj et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences

(2017) Amin Espah Borujeni et al.   NUCLEIC ACIDS RESEARCH

A Synthetic Circuit for Mercury Bioremediation Using Self-Assembling Functional Amyloids

(2017) Pei Kun R. Tay et al.   ACS Synthetic Biology

Genome Sequencing Reveals the Potential of Achromobacter sp. HZ01 for Bioremediation

(2017) Yue-Hui Hong et al.   Frontiers in Microbiology

A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis

(2017) Spencer R. Scott et al.   Nature Microbiology

Combinatorial metabolic engineering of Pseudomonas putida KT2440 for efficient mineralization of 1,2,3-trichloropropane

(2017) Ting Gong et al.   Scientific Reports

Sugar Synthesis from CO2 in Escherichia coli

(2016) Niv Antonovsky et al.   CELL

Genome Shuffling of Stenotrophomonas maltophilia OK-5 for Improving the Degradation of Explosive RDX (Hexahydro-1,3,5-trinitro-1,3,5-triazine)

(2016) Bheong-Uk Lee et al.   CURRENT MICROBIOLOGY

Ideonella sakaiensis sp. nov., isolated from a microbial consortium that degrades poly(ethylene terephthalate)

(2016) Somboon Tanasupawat et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Biodegradation of Chlorpyrifos, Malathion, and Dimethoate by Three Strains of Bacteria Isolated from Pesticide-Polluted Soils in Sudan

(2016) Abd Elaziz S. A. Ishag et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Biodegradation of pendimethalin by Bacillus subtilis Y3

(2016) Haiyan Ni et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

A comprehensive guide of remediation technologies for oil contaminated soil — Present works and future directions

(2016) Mee Wei Lim et al.   MARINE POLLUTION BULLETIN

Engineering synthetic bacterial consortia for enhanced desulfurization and revalorization of oil sulfur compounds

(2016) Igor Martínez et al.   METABOLIC ENGINEERING

Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes

(2016) Ilaria Benedetti et al.   METABOLIC ENGINEERING

Using global transcription machinery engineering (gTME) to improve ethanol tolerance of Zymomonas mobilis

(2016) Furong Tan et al.   Microbial Cell Factories

A bacterium that degrades and assimilates poly(ethylene terephthalate)

(2016) Shosuke Yoshida et al.   SCIENCE

Plastics and other anthropogenic debris in freshwater birds from Canada

(2016) Erika R. Holland et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Rationally reduced libraries for combinatorial pathway optimization minimizing experimental effort

(2016) Markus Jeschek et al.   Nature Communications

Development of Escherichia coli Strains That Withstand Membrane Protein-Induced Toxicity and Achieve High-Level Recombinant Membrane Protein Production

(2016) Dimitra Gialama et al.   ACS Synthetic Biology

Metabolic Engineering of Pseudomonas putida KT2440 for Complete Mineralization of Methyl Parathion and γ-Hexachlorocyclohexane

(2016) Ting Gong et al.   ACS Synthetic Biology

Biodegradation of 3-methyldiphenylether (MDE) by Hydrogenophaga atypical strain QY7-2 and cloning of the methy-oxidation gene mdeABCD

(2016) Qian Yang et al.   Scientific Reports

A CRISPR-Cas9 Assisted Non-Homologous End-Joining Strategy for One-step Engineering of Bacterial Genome

(2016) Tianyuan Su et al.   Scientific Reports

Tolerance engineering in bacteria for the production of advanced biofuels and chemicals

(2015) Aindrila Mukhopadhyay   TRENDS IN MICROBIOLOGY

Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria

(2014) I. Farasat et al.   Molecular Systems Biology

Biodegradation of phenol in hypersaline conditions by Halomonas sp. strain PH2-2 isolated from saline soil

(2013) Azam Haddadi et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Glycolipids of Pseudomonas and Rhodococcus oil-degrading bacteria used in bioremediation preparations: Formation and structure

(2013) K. Petrikov et al.   PROCESS BIOCHEMISTRY

Molecular Docking: A Powerful Approach for Structure-Based Drug Discovery

(2012) Xuan-Yu Meng et al.   Current Computer-Aided Drug Design

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene

(2012) Pablo I. Nikel et al.   METABOLIC ENGINEERING

Laboratory evolution of copper tolerant yeast strains

(2012) Giusy Adamo et al.   Microbial Cell Factories

In vivo genome editing using a high-efficiency TALEN system

(2012) Victoria M. Bedell et al.   NATURE

Cultivation of unculturable soil bacteria

(2012) Van H.T. Pham et al.   TRENDS IN BIOTECHNOLOGY

Heavy metals and living systems: An overview

(2011) Reena Singh et al.   INDIAN JOURNAL OF PHARMACOLOGY

Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes

(2010) Dokyun Na et al.   BMC Systems Biology

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

(2010) Christopher L Hemme et al.   ISME Journal

Oscillations by Minimal Bacterial Suicide Circuits Reveal Hidden Facets of Host-Circuit Physiology

(2010) Philippe Marguet et al.   PLoS One

Programming cells by multiplex genome engineering and accelerated evolution

(2009) Harris H. Wang et al.   NATURE

Synthetic protein scaffolds provide modular control over metabolic flux

(2009) John E Dueber et al.   NATURE BIOTECHNOLOGY

Evolution of efficient pathways for degradation of anthropogenic chemicals

(2009) Shelley D Copley   Nature Chemical Biology

Bacterial Degradation of Aromatic Compounds

(2009) Jong-Su Seo et al.   International Journal of Environmental Research and Public Health