Enhancing Microbial Pollutant Degradation by Integrating Eco-Evolutionary Principles with Environmental Biotechnology

Directed Evolution of Microbial Communities

(2021) Álvaro Sánchez et al.   Annual Review of Biophysics

A Deep Learning Approach to Antibiotic Discovery

(2020) Jonathan M. Stokes et al.   CELL

Omics Approaches to Pesticide Biodegradation

(2020) Alexis Rodríguez et al.   CURRENT MICROBIOLOGY

Microbial Degradation of Hydrocarbons—Basic Principles for Bioremediation: A Review

(2020) Łukasz Ławniczak et al.   MOLECULES

RNA-targeting CRISPR systems from metagenomic discovery to transcriptomic engineering

(2020) Aaron A. Smargon et al.   NATURE CELL BIOLOGY

Ecology of the plastisphere

(2020) Linda A. Amaral-Zettler et al.   NATURE REVIEWS MICROBIOLOGY

Harnessing ecological and evolutionary principles to guide the design of microbial production consortia

(2020) Samir Giri et al.   CURRENT OPINION IN BIOTECHNOLOGY

An engineered PET depolymerase to break down and recycle plastic bottles

(2020) V. Tournier et al.   NATURE

Experimental manipulation of selfish genetic elements links genes to microbial community function

(2020) Steven D. Quistad et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Anthropogenic pollution of aquatic ecosystems: Emerging problems with global implications

(2020) Donat-P. Häder et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacteria in Heavy Metal Remediation and Nanoparticle Biosynthesis

(2020) Siavash Iravani et al.   ACS Sustainable Chemistry & Engineering

Meta‐population structure and the evolutionary transition to multicellularity

(2020) Caroline J. Rose et al.   ECOLOGY LETTERS

Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity

(2020) Guilhem Doulcier et al.   eLife

Metagenomic engineering of the mammalian gut microbiome in situ

(2019) Carlotta Ronda et al.   NATURE METHODS

Rational Protein Engineering of Thermo-Stable PETase from Ideonella sakaiensis for Highly Efficient PET Degradation

(2019) Hyeoncheol Francis Son et al.   ACS Catalysis

Emerging strategies for engineering microbial communities

(2019) Ryan Tsoi et al.   BIOTECHNOLOGY ADVANCES

When We Stop Thinking about Microbes as Cells

(2019) Jordi van Gestel et al.   JOURNAL OF MOLECULAR BIOLOGY

Plastics: Microbial Degradation, Environmental and Biotechnological Perspectives

(2019) Dominik Danso et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Simulations reveal challenges to artificial community selection and possible strategies for success

(2019) Li Xie et al.   PLOS BIOLOGY

Understanding microbial community dynamics to improve optimal microbiome selection

(2019) Robyn J. Wright et al.   Microbiome

Common principles and best practices for engineering microbiomes

(2019) Christopher E. Lawson et al.   NATURE REVIEWS MICROBIOLOGY

Archaeological assessment reveals Earth’s early transformation through land use

(2019) Lucas Stephens et al.   SCIENCE

Artificially selecting microbial communities: If we can breed dogs, why not microbiomes?

(2019) Flor I. Arias-Sánchez et al.   PLOS BIOLOGY

Effect of the Reproduction Method in an Artificial Selection Experiment at the Community Level

(2019) Tiffany Raynaud et al.   Frontiers in Ecology and Evolution

Advancing functional and translational microbiome research using meta-omics approaches

(2019) Xu Zhang et al.   Microbiome

Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis

(2019) Sandra Alonso et al.   Nature Catalysis

The social network of microorganisms — how auxotrophies shape complex communities

(2018) Karsten Zengler et al.   NATURE REVIEWS MICROBIOLOGY

Metabolic division of labor in microbial systems

(2018) Ryan Tsoi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering PGPMOs through Gene Editing and Systems Biology: A Solution for Phytoremediation?

(2018) Supratim Basu et al.   TRENDS IN BIOTECHNOLOGY

Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches

(2018) Muneer A. Malla et al.   Frontiers in Microbiology

Bioremediation through microbes: systems biology and metabolic engineering approach

(2018) Arun Kumar Dangi et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Endocrine disrupting chemicals in wild freshwater fishes: Species, tissues, sizes and human health risks

(2018) Xinyi Zhou et al.   ENVIRONMENTAL POLLUTION

Critical review: Grand challenges in assessing the adverse effects of contaminants of emerging concern on aquatic food webs

(2018) Elena Nilsen et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Preserving microbial diversity

(2018) Maria G. Dominguez Bello et al.   SCIENCE

Cooperation in microbial communities and their biotechnological applications

(2017) Matteo Cavaliere et al.   ENVIRONMENTAL MICROBIOLOGY

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Bacterial Unculturability and the Formation of Intercellular Metabolic Networks

(2017) Samay Pande et al.   TRENDS IN MICROBIOLOGY

Toward Rational Design of High-efficiency Enzyme Cascades

(2017) Yifei Zhang et al.   ACS Catalysis

A review on the use of microalgal consortia for wastewater treatment

(2017) Ana L. Gonçalves et al.   Algal Research-Biomass Biofuels and Bioproducts

Bioaccumulation of persistent organic pollutants in the deepest ocean fauna

(2017) Alan J. Jamieson et al.   Nature Ecology & Evolution

Spatial structure, cooperation and competition in biofilms

(2016) Carey D. Nadell et al.   NATURE REVIEWS MICROBIOLOGY

A bacterium that degrades and assimilates poly(ethylene terephthalate)

(2016) Shosuke Yoshida et al.   SCIENCE

Manipulating Bacterial Communities by in situ Microbiome Engineering

(2016) Ravi U. Sheth et al.   TRENDS IN GENETICS

Directed Evolution of Enzymes for Industrial Biocatalysis

(2015) Joanne L. Porter et al.   CHEMBIOCHEM

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plastic waste inputs from land into the ocean

(2015) J. R. Jambeck et al.   SCIENCE

Biodiversity and Ecosystem Functioning

(2014) David Tilman et al.   Annual Review of Ecology Evolution and Systematics

Life cycles, fitness decoupling and the evolution of multicellularity

(2014) Katrin Hammerschmidt et al.   NATURE

Emergent Biosynthetic Capacity in Simple Microbial Communities

(2014) Hsuan-Chao Chiu et al.   PLoS Computational Biology

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

Evolution in metacommunities

(2011) C. J. Goodnight   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental niche evolution alters the strength of the diversity–productivity relationship

(2010) Dominique Gravel et al.   NATURE

Systems biology approaches to bioremediation

(2008) Víctor de Lorenzo   CURRENT OPINION IN BIOTECHNOLOGY

Fitness drift of an atrazine-degrading population under atrazine selection pressure

(2008) Marion Devers et al.   ENVIRONMENTAL MICROBIOLOGY