OPT gene family analysis of potato (Solanum tuberosum) responding to heavy metal stress: Comparative omics and co-expression networks revealed the underlying core templates and specific response patterns

Co-expression Networks From Gene Expression Variability Between Genetically Identical Seedlings Can Reveal Novel Regulatory Relationships

(2021) Sandra Cortijo et al.   Frontiers in Plant Science

Genome-wide analysis of the apple CaCA superfamily reveals that MdCAX proteins are involved in the abiotic stress response as calcium transporters

(2021) Ke Mao et al.   BMC PLANT BIOLOGY

Metal transporters in organelles and their roles in heavy metal transportation and sequestration mechanisms in plants

(2021) Abhimanyu Jogawat et al.   PHYSIOLOGIA PLANTARUM

Identification of novel heavy metal detoxification proteins in Solanum tuberosum: insights to improve food security protection from metal ion stress

(2021) Guandi He et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Genome-wide systematic characterization of the HAK/KUP/KT gene family and its expression profile during plant growth and in response to low-K+ stress in Saccharum

(2020) Xiaomin Feng et al.   BMC PLANT BIOLOGY

Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

(2020) Yuxiang Li et al.   BMC GENOMICS

Developing a cadmium resistant rice genotype with OsHIPP29 locus for limiting cadmium accumulation in the paddy crop

(2020) Bai Qing Zhang et al.   CHEMOSPHERE

The Litsea genome and the evolution of the laurel family

(2020) Yi-Cun Chen et al.   Nature Communications

Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton

(2020) Waqar Afzal Malik et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Leveraging computational genomics to understand the molecular basis of metal homeostasis

(2020) Nicolas Grosjean et al.   NEW PHYTOLOGIST

Genome-wide analysis of the NRAMP gene family in potato (Solanum tuberosum): Identification, expression analysis and response to five heavy metals stress

(2020) Weijun Tian et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Genome-Wide Analysis of the Cyclin Gene Family and Their Expression Profile in Medicago truncatula

(2020) Juan Meng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A structural overview of the zinc transporters in the cation diffusion facilitator family

(2019) Camila A. Cotrim et al.   Acta Crystallographica Section D-Structural Biology

Diagnosis of soil contamination using microbiological indices: A review on heavy metal pollution

(2019) Jiayi Tang et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

BLASTP-ACC: Parallel Architecture and Hardware Accelerator Design for BLAST-Based Protein Sequence Alignment

(2019) Yu-Cheng Li et al.   IEEE Transactions on Biomedical Circuits and Systems

The tin1 gene retains the function of promoting tillering in maize

(2019) Xuan Zhang et al.   Nature Communications

Identification of novel cis -elements bound by BplMYB46 involved in abiotic stress responses and secondary wall deposition

(2018) Huiyan Guo et al.   Journal of Integrative Plant Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative in Silico Analysis of Ferric Reduction Oxidase (FRO) Genes Expression Patterns in Response to Abiotic Stresses, Metal and Hormone Applications

(2018) Izhar Muhammad et al.   MOLECULES

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold

(2018) Inti Anabela Pagnuco et al.   PLoS One

OUP accepted manuscript

(2018)   JOURNAL OF EXPERIMENTAL BOTANY

Regulating the Regulators: The Control of Transcription Factors in Plant Defense Signaling

(2018) Danny Ng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants

(2018) He Su et al.   MOLECULES

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

The Yellow Stripe-Like (YSL) Gene Functions in Internal Copper Transport in Peanut

(2018) Jing Dai et al.   Genes

Analysis of the oligopeptide transporter gene family in Ganoderma lucidum: structure, phylogeny, and expression patterns

(2017) Quanju Xiang et al.   GENOME

Intron retention as a component of regulated gene expression programs

(2017) Aishwarya G. Jacob et al.   HUMAN GENETICS

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

(2017) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

New genes from old: asymmetric divergence of gene duplicates and the evolution of development

(2016) Peter W. H. Holland et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Vacuolar compartmentalization as indispensable component of heavy metal detoxification in plants

(2016) Shanti S. Sharma et al.   PLANT CELL AND ENVIRONMENT

Isolation and characterization of a novel cadmium-regulated Yellow Stripe-Like transporter (SnYSL3) in Solanum nigrum

(2016) Shanshan Feng et al.   PLANT CELL REPORTS

Evolution of gene duplication in plants

(2016) Nicholas Panchy et al.   PLANT PHYSIOLOGY

Species-specific duplications of NBS-encoding genes in Chinese chestnut (Castanea mollissima)

(2015) Yan Zhong et al.   Scientific Reports

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Divergence of duplicate genes in exon-intron structure

(2012) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analyses of the oligopeptide transporter gene family in poplar and grape

(2011) Jun Cao et al.   BMC GENOMICS

Evolution of the Oligopeptide Transporter Family

(2011) Kenny M. Gomolplitinant et al.   JOURNAL OF MEMBRANE BIOLOGY

The Oligopeptide Transporters: A Small Gene Family with a Diverse Group of Substrates and Functions?

(2011) Mark Lubkowitz   Molecular Plant

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

OsYSL6 Is Involved in the Detoxification of Excess Manganese in Rice

(2011) A. Sasaki et al.   PLANT PHYSIOLOGY

Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese

(2010) Yasuhiro Ishimaru et al.   PLANT JOURNAL