Current laboratory protocols for detecting fish species with environmental DNA optimize sensitivity and reproducibility, especially for more abundant populations

Passive eDNA collection enhances aquatic biodiversity analysis

(2021) Bessey Cindy et al.   Communications Biology

A workflow for the relative quantification of multiple fish species from oceanic water samples using environmental DNA (eDNA) to support large-scale fishery surveys

(2021) Ana Ramón-Laca et al.   PLoS One

Optimizing an eDNA protocol for estuarine environments: Balancing sensitivity, cost and time

(2020) Thiago M. Sanches et al.   PLoS One

Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States

(2020) Mark Y. Stoeckle et al.   Frontiers in Marine Science

Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers

(2019) Isabel Cantera et al.   Scientific Reports

Improving eDNA yield and inhibitor reduction through increased water volumes and multi-filter isolation techniques

(2019) Margaret E. Hunter et al.   Scientific Reports

Sponges as natural environmental DNA samplers

(2019) Stefano Mariani et al.   CURRENT BIOLOGY

An optimised eDNA protocol for detecting fish in lentic and lotic freshwaters using a small water volume

(2019) Teja Petra Muha et al.   PLoS One

Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater

(2019) G. A. C. Singer et al.   Scientific Reports

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

(2019) Ryan P. Kelly et al.   Scientific Reports

The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries

(2018) Brian Klitgaard Hansen et al.   FISH AND FISHERIES

Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus )

(2018) Lynsey R. Harper et al.   Ecology and Evolution

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forests

(2017) Carla M. Lopes et al.   Molecular Ecology Resources

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

(2017) Hirotoshi Sato et al.   Scientific Reports

Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding

(2017) Henrik Krehenwinkel et al.   Scientific Reports

Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary

(2017) Mark Y. Stoeckle et al.   PLoS One

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding

(2017) Elizabeth A. Andruszkiewicz et al.   PLoS One

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Freshwater vertebrate metabarcoding on Illumina platforms using double-indexed primers of the mitochondrial 16S rRNA gene

(2016) Miguel Vences et al.   Conservation Genetics Resources

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes

(2016) Philip Francis Thomsen et al.   PLoS One

Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates

(2015) Elvira Mächler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Particle size distribution and optimal capture of aqueous macrobial eDNA

(2014) Cameron R. Turner et al.   Methods in Ecology and Evolution

Genomics in marine monitoring: New opportunities for assessing marine health status

(2013) Sarah J. Bourlat et al.   MARINE POLLUTION BULLETIN

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline

(2012) Melissa B. Duhaime et al.   VIROLOGY

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications

(2010) Sophie Champlot et al.   PLoS One