Fecal Microbiota Transplantation Influences Procarcinogenic Escherichia coli in Recipient Recurrent Clostridioides difficile Patients

Mutational signature in colorectal cancer caused by genotoxic pks+ E. coli

(2020) Cayetano Pleguezuelos-Manzano et al.   NATURE

Colibactin DNA-damage signature indicates mutational impact in colorectal cancer

(2020) Paulina J. Dziubańska-Kusibab et al.   NATURE MEDICINE

Carriage of Colibactin-producing Bacteria and Colorectal Cancer Risk

(2020) Vadim Dubinsky et al.   TRENDS IN MICROBIOLOGY

Faecal microbiota transplantation for Clostridioides difficile infection: Four years’ experience of the Netherlands Donor Feces Bank

(2020) Elisabeth M Terveer et al.   United European Gastroenterology Journal

A standardised model for stool banking for faecal microbiota transplantation: a consensus report from a multidisciplinary UEG working group

(2020) Josbert J. Keller et al.   United European Gastroenterology Journal

International Cancer Microbiome Consortium consensus statement on the role of the human microbiome in carcinogenesis

(2019) Alasdair J Scott et al.   GUT

International consensus conference on stool banking for faecal microbiota transplantation in clinical practice

(2019) Giovanni Cammarota et al.   GUT

Macrocyclic colibactin induces DNA double-strand breaks via copper-mediated oxidative cleavage

(2019) Zhong-Rui Li et al.   Nature Chemistry

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

(2018) Christopher S. Smillie et al.   Cell Host & Microbe

Campylobacter jejuni promotes colorectal tumorigenesis through the action of cytolethal distending toxin

(2018) Zhen He et al.   GUT

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Understanding the mechanisms of faecal microbiota transplantation

(2016) Alexander Khoruts et al.   Nature Reviews Gastroenterology & Hepatology

Clostridium difficile infection

(2016) Wiep Klaas Smits et al.   Nature Reviews Disease Primers

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile

(2013) Els van Nood et al.   NEW ENGLAND JOURNAL OF MEDICINE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Comparison of quantitative PCR assays for Escherichia coli targeting ribosomal RNA and single copy genes

(2010) E.C. Chern et al.   LETTERS IN APPLIED MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Genetic Structure and Distribution of the Colibactin Genomic Island among Members of the Family Enterobacteriaceae

(2009) J. Putze et al.   INFECTION AND IMMUNITY

Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea

(2008) Ju Young Chang et al.   JOURNAL OF INFECTIOUS DISEASES