Miniferritins: Small multifunctional protein cages

Iron oxidation in Escherichia coli bacterioferritin ferroxidase centre, a site designed to react rapidly with H2O2 but slowly with O2

(2021) Jacob Pullin et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Spatial Organization of Dps and DNA–Dps Complexes

(2021) Evgeniy V. Dubrovin et al.   JOURNAL OF MOLECULAR BIOLOGY

Dps–DNA interaction in Marinobacter hydrocarbonoclasticus protein: effect of a single-charge alteration

(2021) João P. Jacinto et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Structural Rearrangement of Dps-DNA Complex Caused by Divalent Mg and Fe Cations

(2021) Liubov Dadinova et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Prokaryotic sigma factors and their transcriptional counterparts in Archaea and Eukarya

(2020) Ana G. Abril et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Dps protein is related to resistance of Mycobacterium abscessus subsp. massiliense against stressful conditions

(2020) Nayra Rodrigues de Alcântara et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Dps Protects Enterohemorrhagic Escherichia coli against Acid-Induced Antimicrobial Peptide Killing

(2020) Tracy Lackraj et al.   JOURNAL OF BACTERIOLOGY

The functional identification of Dps in oxidative stress resistance and virulence of Riemerella anatipestifer CH-1 using a new unmarked gene deletion strategy

(2020) Xiu Tian et al.   VETERINARY MICROBIOLOGY

Nucleoid Associated Proteins: The Small Organizers That Help to Cope With Stress

(2020) Joanna Hołówka et al.   Frontiers in Microbiology

Biochemical and structural characterization of a thermostable Dps protein with His‐type ferroxidase centers and outer metal‐binding sites

(2020) Takuo Minato et al.   FEBS Open Bio

During oxidative stress the Clp proteins of Escherichia coli ensure that iron pools remain sufficient to reactivate oxidized metalloenzymes

(2020) Ananya Sen et al.   JOURNAL OF BACTERIOLOGY

Morphological peculiarities of the DNA-protein complexes in starved Escherichia coli cells

(2020) Natalia Loiko et al.   PLoS One

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

DNA-binding protein from starvation cells traps intracellular free-divalent iron and plays an important role in oxidative stress resistance in Acetobacter pasteurianus NBRC 3283

(2020) Toshihiro Suzuki et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Protective Dps–DNA co‐crystallization in stressed cells: an in vitro structural study by small‐angle X‐ray scattering and cryo‐electron tomography

(2019) Liubov A. Dadinova et al.   FEBS LETTERS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Reversible Click Chemistry for Ultrafast and Quantitative Formation of Protein–Polymer Nanoassembly and Intracellular Protein Delivery

(2019) Bin Liu et al.   ACS Nano

Molecular Characterization and Heterologous Production of the Bacteriocin Peocin, a DNA Starvation/Stationary Phase Protection Protein, from Paenibacillus ehimensis NPUST1

(2019) Tseng et al.   MOLECULES

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria

(2019) Christoph Howe et al.   PLoS One

Projection structures reveal the position of the DNA within DNA-Dps Co-crystals

(2019) Andrey Moiseenko et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps

(2019) Kornelius Zeth et al.   INORGANIC CHEMISTRY

The archaeal Dps nanocage targets kidney proximal tubules via glomerular filtration

(2019) Masaki Uchida et al.   JOURNAL OF CLINICAL INVESTIGATION

Structural diffusion properties of two atypical Dps from the cyanobacterium Nostoc punctiforme disclose interactions with ferredoxins and DNA

(2019) Vamsi K. Moparthi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Role of Surface RGD Patterns on Protein Nanocages in Tumor Targeting Revealed Using Precise Discrete Models

(2019) Ti Fang et al.   Small

The interplay between Mn and Fe in Deinococcus radiodurans triggers cellular protection during paraquat-induced oxidative stress

(2019) Sandra P. Santos et al.   Scientific Reports

Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription

(2018) Richard Janissen et al.   CELL

Differential biochemical properties of three canonical Dps proteins from the cyanobacteriumNostoc punctiformesuggest distinct cellular functions

(2018) Christoph Howe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Interaction of deoxyribonucleic acid with deoxyribonucleic acid-binding protein from starved cells: cluster formation and crystal growing as a model of initial stages of nucleoid biocrystallization

(2018) Eduard Tereshkin et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Direct Evidence for Ferrous Ion Oxidation and Incorporation in the Absence of Oxidants by Dps from Marinobacter hydrocarbonoclasticus

(2018) Daniela Penas et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Ferritin, cellular iron storage and regulation

(2017) Paolo Arosio et al.   IUBMB LIFE

Iron chemistry at the service of life

(2017) Manu Sánchez et al.   IUBMB LIFE

SAXS Structural Studies of Dps from Deinococcus radiodurans Highlights the Conformation of the Mobile N-Terminal Extensions

(2017) Sandra P. Santos et al.   JOURNAL OF MOLECULAR BIOLOGY

Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis

(2017) Sunanda Margrett Williams et al.   Metallomics

OxyR-activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis

(2017) Xiaoyun Xia et al.   PLoS One

The nucleoid protein Dps binds genomic DNA of Escherichia coli in a non-random manner

(2017) S. S. Antipov et al.   PLoS One

Chemistry at the protein–mineral interface in L-ferritin assists the assembly of a functional (μ3-oxo)Tris[(μ2-peroxo)] triiron(III) cluster

(2017) Cecilia Pozzi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a novel dual-domain nanoparticle antigen construct for universal influenza vaccine

(2017) Yawei Ni et al.   VACCINE

The Helicobacter cinaedi antigen CAIP participates in atherosclerotic inflammation by promoting the differentiation of macrophages in foam cells

(2017) Mario Milco D’Elios et al.   Scientific Reports

Single-Cell Analysis of the Dps Response to Oxidative Stress

(2016) Michela De Martino et al.   JOURNAL OF BACTERIOLOGY

Characterization of the DNA-Mediated Oxidation of Dps, A Bacterial Ferritin

(2016) Anna R. Arnold et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Conserved histidine residues at the ferroxidase centre of the Campylobacter jejuni Dps protein are not strictly required for metal binding and oxidation

(2016) Heloisa B. S. Sanchuki et al.   MICROBIOLOGY-SGM

Nucleoid clumping is dispensable for the Dps-dependent hydrogen peroxide resistance in Staphylococcus aureus

(2016) Yuri Ushijima et al.   MICROBIOLOGY-SGM

Hysteresis in DNA compaction by Dps is described by an Ising model

(2016) Natalia N. Vtyurina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The importance of eukaryotic ferritins in iron handling and cytoprotection

(2015) P. Arosio et al.   BIOCHEMICAL JOURNAL

Ferritin: A Versatile Building Block for Bionanotechnology

(2015) Günther Jutz et al.   CHEMICAL REVIEWS

Dps fromDeinococcus radiodurans: oligomeric forms of Dps1 with distinct cellular functions and Dps2 involved in metal storage

(2015) Sandra P. Santos et al.   FEBS Journal

A single gene all3940 (Dps) overexpression in Anabaena sp. PCC 7120 confers multiple abiotic stress tolerance via proteomic alterations

(2015) Om Prakash Narayan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The DNA-Binding Protein from Starved Cells (Dps) Utilizes Dual Functions To Defend Cells against Multiple Stresses

(2015) Vlad O. Karas et al.   JOURNAL OF BACTERIOLOGY

Synthesizing CdSe nanoparticles by using a low concentration of cadmium ions and the apoferritin protein cage of marine pennate diatoms

(2015) Kenji Iwahori et al.   MATERIALS LETTERS

Modes of Escherichia coli Dps Interaction with DNA as Revealed by Atomic Force Microscopy

(2015) Vladislav V. Melekhov et al.   PLoS One

Structural details of the OxyR peroxide-sensing mechanism

(2015) Inseong Jo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhancement of thermoelectric properties of carbon nanotube composites by inserting biomolecules at nanotube junctions

(2014) Mitsuhiro Ito et al.   Applied Physics Express

Protein-based supramolecular polymers: progress and prospect

(2014) Quan Luo et al.   CHEMICAL COMMUNICATIONS

Biological Construction of Single-Walled Carbon Nanotube Electron Transfer Pathways in Dye-Sensitized Solar Cells

(2014) Ippei Inoue et al.   ChemSusChem

Nucleoid compaction by MrgAAsp56Ala/Glu60Aladoes not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages

(2014) Yuri Ushijima et al.   FEMS MICROBIOLOGY LETTERS

Encapsulation of curcumin in recombinant human H-chain ferritin increases its water-solubility and stability

(2014) Lingli Chen et al.   FOOD RESEARCH INTERNATIONAL

Effect of Nonheme Iron-Containing Ferritin Dpr in the Stress Response and Virulence of Pneumococci

(2014) Chun-Zhen Hua et al.   INFECTION AND IMMUNITY

Overlapping and Complementary Oxidative Stress Defense Mechanisms in Nontypeable Haemophilus influenzae

(2014) Alistair Harrison et al.   JOURNAL OF BACTERIOLOGY

A Histidine Aspartate Ionic Lock Gates the Iron Passage in Miniferritins fromMycobacterium smegmatis

(2014) Sunanda Margrett Williams et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Self-assembly of ferritin nanocages into linear chains induced by poly(α,l-lysine)

(2013) R. Yang et al.   CHEMICAL COMMUNICATIONS

Cellular and functional specificity among ferritin-like proteins in the multicellular cyanobacteriumNostoc punctiforme

(2013) Martin Ekman et al.   ENVIRONMENTAL MICROBIOLOGY

Encapsulation of β-carotene within ferritin nanocages greatly increases its water-solubility and thermal stability

(2013) Lingli Chen et al.   FOOD CHEMISTRY

Differential regulation and activity against oxidative stress of Dps proteins in Bacillus cereus

(2013) Jwu-Ching Shu et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Protection from Oxidative Stress Relies Mainly on Derepression of OxyR-Dependent KatB and Dps in Shewanella oneidensis

(2013) Y. Jiang et al.   JOURNAL OF BACTERIOLOGY

Campylobacter jejuni Dps Protein Binds DNA in the Presence of Iron or Hydrogen Peroxide

(2013) L. F. Huergo et al.   JOURNAL OF BACTERIOLOGY

DNA Protection by the Bacterial Ferritin Dps via DNA Charge Transport

(2013) Anna R. Arnold et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Evolution of an Osmotically Inducible dps in the Genus Streptomyces

(2013) Paul D. Facey et al.   PLoS One

Apoferritin-encapsulated PbS quantum dots significantly inhibit growth of colorectal carcinoma cells

(2013) Tracey D. Bradshaw et al.   Journal of Materials Chemistry B

dprandsodin Streptococcus mutans Are Involved in Coexistence with S. sanguinis, and PerR Is Associated with Resistance to H2O2

(2012) Kei Fujishima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Crystal structure of Helicobacter pylori neutrophil-activating protein with a di-nuclear ferroxidase center in a zinc or cadmium-bound form

(2012) Hideshi Yokoyama et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Metal Binding at the Deinococcus radiodurans Dps-1 N-Terminal Metal Site Controls Dodecameric Assembly and DNA Binding

(2012) Khoa Huynh Nguyen et al.   BIOCHEMISTRY

A Fur-like protein PerR regulates two oxidative stress response related operons dpr and metQIN in Streptococcus suis

(2012) Tengfei Zhang et al.   BMC MICROBIOLOGY

The Role of Heme Binding by DNA-protective Protein from Starved Cells (Dps) in the Tolerance ofPorphyromonas gingivalisto Heme Toxicity

(2012) Jin-Long Gao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A novel iron- and copper-binding protein in the Lyme disease spirochaete

(2012) Peng Wang et al.   MOLECULAR MICROBIOLOGY

Role of the Dickeya dadantii Dps protein

(2011) Aïda Boughammoura et al.   BIOMETALS

A water-soluble carbon nanotube network conjugated by nanoparticles with defined nanometre gaps

(2011) Mime Kobayashi et al.   CHEMICAL COMMUNICATIONS

A novel bifunctional protein supramolecule for construction of carbon nanotube–titanium hybrid material

(2011) Ippei Inoue et al.   CHEMICAL COMMUNICATIONS

The Escherichia coli K-12 MntR Miniregulon Includes dps, Which Encodes the Major Stationary-Phase DNA-Binding Protein

(2011) K. Yamamoto et al.   JOURNAL OF BACTERIOLOGY

Characterization of the Bacteroides fragilis bfr Gene Product Identifies a Bacterial DPS-Like Protein and Suggests Evolutionary Links in the Ferritin Superfamily

(2011) G. H. Gauss et al.   JOURNAL OF BACTERIOLOGY

Structure and Mechanism of Iron Translocation by a Dps Protein fromMicrobacterium arborescens

(2011) Jelena Pesek et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The N-end rule pathway and regulation by proteolysis

(2011) Alexander Varshavsky   PROTEIN SCIENCE

On the stoichiometry of Deinococcus radiodurans Dps-1 binding to duplex DNA

(2011) Khoa H. Nguyen et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structures of the SEp22 dodecamer, a Dps-like protein fromSalmonella entericasubsp.entericaserovar Enteritidis

(2010) Takanori Miyamoto et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Ralstonia solanacearum Dps Contributes to Oxidative Stress Tolerance and to Colonization of and Virulence on Tomato Plants

(2010) J. M. Colburn-Clifford et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural characterization and biological implications of di-zinc binding in the ferroxidase center of Streptococcus pyogenes Dpr

(2010) Teemu Haikarainen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Bio-templated CdSe nanoparticle synthesis in a cage shaped protein, Listeria-Dps, and their two dimensional ordered array self-assembly

(2010) Mitsuhiro Okuda et al.   CHEMICAL COMMUNICATIONS

Virus hybrids as nanomaterials for biotechnology

(2010) Carissa M Soto et al.   CURRENT OPINION IN BIOTECHNOLOGY

Thermosynechoccus elongatus DpsA binds Zn(II) at a unique three histidine-containing ferroxidase center and utilizes O2 as iron oxidant with very high efficiency, unlike the typical Dps proteins

(2010) Flaminia Alaleona et al.   FEBS Journal

EPR spectroscopy and catalase activity of manganese-bound DNA-binding protein from nutrient starved cells

(2010) Joshua Allen Hayden et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus suis Dpr

(2010) Teemu Haikarainen et al.   JOURNAL OF MOLECULAR BIOLOGY

Two-Dimensional Array of ZnSe-Ferritin Nanodots as a Sensor Media for Gamma-Aminobutyric Acid

(2010) Ting Wang et al.   MOLECULAR CRYSTALS AND LIQUID CRYSTALS

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Bionanoparticles as functional macromolecular building blocks – A new class of nanomaterials

(2010) Günther Jutz et al.   POLYMER

Protein cage nanoparticles as secondary building units for the synthesis of 3-dimensional coordination polymers

(2010) Chris C. Broomell et al.   Soft Matter

A Helix Swapping Study of Two Protein Cages

(2009) Rongli Fan et al.   BIOCHEMISTRY

Dps-like proteins: structural and functional insights into a versatile protein family

(2009) Teemu Haikarainen et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Synthesis of Iron Oxide Nanoparticles inListeria innocua Dps(DNA-Binding Protein from Starved Cells): A Study with the Wild-Type Protein and a Catalytic Centre Mutant

(2009) Pierpaolo Ceci et al.   CHEMISTRY-A EUROPEAN JOURNAL

Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli

(2009) Robert L Ninnis et al.   EMBO JOURNAL

Role ofmrgAin peroxide and light stress in the cyanobacteriumSynechocystissp. PCC 6803

(2009) Jamie S. Foster et al.   FEMS MICROBIOLOGY LETTERS

Suzuki-Miyaura cross-coupling catalyzed by protein-stabilized palladium nanoparticles under aerobic conditions in water: application to a one-pot chemoenzymatic enantioselective synthesis of chiral biaryl alcohols

(2009) A. Prastaro et al.   GREEN CHEMISTRY

Iron Translocation into and out ofListeria innocuaDps and Size Distribution of the Protein-enclosed Nanomineral Are Modulated by the Electrostatic Gradient at the 3-fold “Ferritin-like” Pores

(2009) Giuliano Bellapadrona et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Dps protein of Escherichia coli is involved in copper homeostasis

(2009) Daniel Thieme et al.   MICROBIOLOGICAL RESEARCH

The OxyR homologue in Tannerella forsythia regulates expression of oxidative stress responses and biofilm formation

(2009) K. Honma et al.   MICROBIOLOGY-SGM

ClpS is the recognition component forEscherichia colisubstrates of the N-end rule degradation pathway

(2009) Ronny Schmidt et al.   MOLECULAR MICROBIOLOGY

Streptomyces coelicolorDps-like proteins: differential dual roles in response to stress during vegetative growth and in nucleoid condensation during reproductive cell division

(2009) P. D. Facey et al.   MOLECULAR MICROBIOLOGY

The Mycobacterial MsDps2 Protein Is a Nucleoid-Forming DNA Binding Protein Regulated by Sigma Factors σA and σB

(2009) Ramachandran Saraswathi et al.   PLoS One

Viral capsids as templates for the production of monodisperse Prussian blue nanoparticles

(2008) Andrés de la Escosura et al.   CHEMICAL COMMUNICATIONS

Characterization of an acquireddps-containing gene island in the lactic acid bacteriumOenococcus oeni

(2008) A. Athané et al.   JOURNAL OF APPLIED MICROBIOLOGY

Biosupramolecules for nano-devices: biomineralization of nanoparticles and their applications

(2008) Ichiro Yamashita   JOURNAL OF MATERIALS CHEMISTRY

Controlled Assembly of Bifunctional Chimeric Protein Cages and Composition Analysis Using Noncovalent Mass Spectrometry

(2008) Sebyung Kang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Click Chemistry: A Powerful Tool to Create Polymer‐Based Macromolecular Chimeras

(2008) Benjamin Le Droumaguet et al.   MACROMOLECULAR RAPID COMMUNICATIONS

Selective repression by Fis and H-NS at theEscherichia coli dpspromoter

(2008) David C. Grainger et al.   MOLECULAR MICROBIOLOGY

Structural basis of the zinc- and terbium-mediated inhibition of ferroxidase activity in Dps ferritin-like proteins

(2008) Heli Havukainen et al.   PROTEIN SCIENCE

Transcription of the Listeria monocytogenes fri gene is growth-phase dependent and is repressed directly by Fur, the ferric uptake regulator

(2007) Francesca Fiorini et al.   GENE

Structural Studies on the Second Mycobacterium smegmatis Dps: Invariant and Variable Features of Structure, Assembly and Function

(2007) Siddhartha Roy et al.   JOURNAL OF MOLECULAR BIOLOGY