Effect of dark environment on intestinal flora and expression of genes related to liver metabolism in zebrafish (Danio rerio)

Melatonin controls microbiota in colitis by goblet cell differentiation and antimicrobial peptide production through Toll-like receptor 4 signalling

(2020) Seung Won Kim et al.   Scientific Reports

Endogenous circadian time genes expressions in the liver of mice under constant darkness

(2020) Huan Li et al.   BMC GENOMICS

Interactions between gut microbiota and non-alcoholic liver disease: the role of microbiota-derived metabolites

(2019) Yufang Ding et al.   PHARMACOLOGICAL RESEARCH

Contribution of the gut microbiota to the regulation of host metabolism and energy balance: a focus on the gut–liver axis

(2019) N. M. Delzenne et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Photoperiod affects blunt snout bream (Megalobrama amblycephala) growth, diel rhythm of cortisol, activities of antioxidant enzymes and mRNA expression of GH/IGF-I

(2019) Hongyan Tian et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Use of biological detection methods to assess dioxin-like compounds in sediments of Bohai Bay, China

(2019) Wenjing Dong et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Circadian Clock Genes in the Metabolism of Non-alcoholic Fatty Liver Disease

(2019) Dongmei Shi et al.   Frontiers in Physiology

Reconstitution of Organismal Liver Clock Function Requires Light

(2019) Takahito Miyake et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Environmental Cycles, Melatonin, and Circadian Control of Stress Response in Fish

(2019) Francisco Javier Sánchez-Vázquez et al.   Frontiers in Endocrinology

Oolong Tea Polyphenols Ameliorate Circadian Rhythm of Intestinal Microbiome and Liver Clock Genes in Mouse Model

(2019) Tongtong Guo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The gut microbiota: A new target in the management of alcohol dependence?

(2018) Sophie Leclercq et al.   ALCOHOL

Sleep deprivation impairs cognitive performance in zebrafish: A matter of fact?

(2018) Jaquelinne Pinheiro-da-Silva et al.   BEHAVIOURAL PROCESSES

Characterization of basal gene expression trends over a diurnal cycle in Xiphophorus maculatus skin, brain and liver

(2018) Yuan Lu et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

The effects of phytochemicals on circadian rhythm and related diseases

(2018) Tao Xu et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Acute exposure to PBDEs at an environmentally realistic concentration causes abrupt changes in the gut microbiota and host health of zebrafish

(2018) Lianguo Chen et al.   ENVIRONMENTAL POLLUTION

Helicobacter pylori eradication with bismuth quadruple therapy leads to dysbiosis of gut microbiota with an increased relative abundance of Proteobacteria and decreased relative abundances of Bacteroidetes and Actinobacteria

(2018) Ping-I Hsu et al.   HELICOBACTER

Dietary soybean meal affects intestinal homoeostasis by altering the microbiota, morphology and inflammatory cytokine gene expression in northern snakehead

(2018) Shuyan Miao et al.   Scientific Reports

Effects of Melatonin on Intestinal Microbiota and Oxidative Stress in Colitis Mice

(2018) Dan Zhu et al.   Biomed Research International

Sleep and Circadian Hygiene and Inflammatory Bowel Disease

(2017) Garth R. Swanson et al.   GASTROENTEROLOGY CLINICS OF NORTH AMERICA

The Microbiome and Risk for Obesity and Diabetes

(2017) Anthony L. Komaroff   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2017) Kristoffer Forslund et al.   NATURE

Bile acid–microbiota crosstalk in gastrointestinal inflammation and carcinogenesis

(2017) Wei Jia et al.   Nature Reviews Gastroenterology & Hepatology

Dynamics of the human gut microbiome in inflammatory bowel disease

(2017) Jonas Halfvarson et al.   Nature Microbiology

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations

(2016) Christoph A. Thaiss et al.   CELL

Confounding Effects of Metformin on the Human Gut Microbiome in Type 2 Diabetes

(2016) Adil Mardinoglu et al.   Cell Metabolism

Gut microbiota directs PPARγ‐driven reprogramming of the liver circadian clock by nutritional challenge

(2016) Mari Murakami et al.   EMBO REPORTS

Circadian Rhythms in Gastrointestinal Health and Diseases

(2016) Faraz Bishehsari et al.   GASTROENTEROLOGY

An Intestinal Microbiota–Farnesoid X Receptor Axis Modulates Metabolic Disease

(2016) Frank J. Gonzalez et al.   GASTROENTEROLOGY

Circadian Clock Control of Liver Metabolic Functions

(2016) Hans Reinke et al.   GASTROENTEROLOGY

Liver PPARα is crucial for whole-body fatty acid homeostasis and is protective against NAFLD

(2016) Alexandra Montagner et al.   GUT

Circadian Metabolism: From Mechanisms to Metabolomics and Medicine

(2016) Steven A. Brown   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Erratum: Erratum: Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals

(2016) Alexandra Montagner et al.   Scientific Reports

Genetically Blocking the Zebrafish Pineal Clock Affects Circadian Behavior

(2016) Zohar Ben-Moshe Livne et al.   PLoS Genetics

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

A neuroendocrine role for chemerin in hypothalamic remodelling and photoperiodic control of energy balance

(2016) Gisela Helfer et al.   Scientific Reports

Effects of Diurnal Variation of Gut Microbes and High-Fat Feeding on Host Circadian Clock Function and Metabolism

(2015) Vanessa Leone et al.   Cell Host & Microbe

Subchronic Exposure of Mice to Cadmium Perturbs Their Hepatic Energy Metabolism and Gut Microbiome

(2015) Songbin Zhang et al.   CHEMICAL RESEARCH IN TOXICOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Gut microbiota and host metabolism in liver cirrhosis

(2015) Makoto Usami   WORLD JOURNAL OF GASTROENTEROLOGY

Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

(2014) Christoph A. Thaiss et al.   CELL

Circadian Clocks and Feeding Time Regulate the Oscillations and Levels of Hepatic Triglycerides

(2014) Yaarit Adamovich et al.   Cell Metabolism

Cloning of circadian rhythmic pathway genes and perturbation of oscillation patterns in endocrine disrupting chemicals (EDCs)-exposed mangrove killifish Kryptolebias marmoratus

(2014) Jae-Sung Rhee et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing

(2014) Tongtong Li et al.   MICROBIAL ECOLOGY

Obesity, fatty liver disease and intestinal microbiota

(2014) Nur Arslan   WORLD JOURNAL OF GASTROENTEROLOGY

Gut Microbiota Regulates Bile Acid Metabolism by Reducing the Levels of Tauro-beta-muricholic Acid, a Naturally Occurring FXR Antagonist

(2013) Sama I. Sayin et al.   Cell Metabolism

Metabolism and the Circadian Clock Converge

(2013) Kristin Eckel-Mahan et al.   PHYSIOLOGICAL REVIEWS

Increased Mitochondrial Activity in BMP7-Treated Brown Adipocytes, Due to Increased CPT1- and CD36-Mediated Fatty Acid Uptake

(2012) Kristy L. Townsend et al.   ANTIOXIDANTS & REDOX SIGNALING

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

It's time to swim! Zebrafish and the circadian clock

(2011) Gad Vatine et al.   FEBS LETTERS

Dietary cholesterol exacerbates hepatic steatosis and inflammation in obese LDL receptor-deficient mice

(2011) Savitha Subramanian et al.   JOURNAL OF LIPID RESEARCH

Increase of hepatic fat accumulation by liver specific expression of Hepatitis B virus X protein in zebrafish

(2010) Yun-Sheng Shieh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

FEEDING ENTRAINMENT OF FOOD-ANTICIPATORY ACTIVITY ANDper1EXPRESSION IN THE BRAIN AND LIVER OF ZEBRAFISH UNDER DIFFERENT LIGHTING AND FEEDING CONDITIONS

(2010) Jose F. López-Olmeda et al.   CHRONOBIOLOGY INTERNATIONAL

Effect of phase delay lighting rotation schedule on daily expression of per2, bmal1, rev-erbα, pparα, and pdk4 genes in the heart and liver of Wistar rats

(2010) Kristína Szántóová et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The role of pH in determining the species composition of the human colonic microbiota

(2009) Sylvia H. Duncan et al.   ENVIRONMENTAL MICROBIOLOGY

REV-ERBα Participates in Circadian SREBP Signaling and Bile Acid Homeostasis

(2009) Gwendal Le Martelot et al.   PLOS BIOLOGY

Molecular cloning, phylogenetic analysis and expression of a MAPEG superfamily gene from the pufferfish Takifugu obscurus

(2008) Jin-Hyoung Kim et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Liver lipid metabolism

(2008) P. Nguyen et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Glucocorticoids and the circadian clock

(2008) Thomas Dickmeis   JOURNAL OF ENDOCRINOLOGY