The use of non-lethal sampling for transcriptomics to assess the physiological status of wild fishes

High Throughput Sequencing of MicroRNA in Rainbow Trout Plasma, Mucus, and Surrounding Water Following Acute Stress

(2021) Heather Ikert et al.   Frontiers in Physiology

Telemetry and genetics reveal asymmetric dispersal of a lake‐feeding salmonid between inflow and outflow spawning streams at a microgeographic scale

(2020) Ross Finlay et al.   Ecology and Evolution

Best practices for non‐lethal blood sampling of fish via the caudal vasculature

(2020) Michael J. Lawrence et al.   JOURNAL OF FISH BIOLOGY

How pathogens affect the marine habitat use and migration of sea trout ( Salmo trutta ) in two Norwegian fjord systems

(2020) Robert J. Lennox et al.   JOURNAL OF FISH DISEASES

Getting the most out of reductionist approaches in comparative biochemistry and physiology

(2020) Jason R. Treberg et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Perspectives on transcriptomics in animal physiology studies

(2020) Christopher J. Martyniuk   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Why ignoring parasites in fish ecology is a mistake

(2020) Juan T. Timi et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The Atlantic salmon whole blood transcriptome and how it relates to major locus maturation genotypes and other tissues

(2020) Samuel C. Andrew et al.   Marine Genomics

mRNAs, proteins and the emerging principles of gene expression control

(2020) Christopher Buccitelli et al.   NATURE REVIEWS GENETICS

Genomic signals found using RNA sequencing show signatures of selection and subtle population differentiation in walleye ( Sander vitreus ) in a large freshwater ecosystem

(2020) Matt J. Thorstensen et al.   Ecology and Evolution

Identification of Hypoxia-Specific Biomarkers in Salmonids Using RNA-Sequencing and Validation Using High-Throughput qPCR

(2020) Arash Akbarzadeh et al.   G3-Genes Genomes Genetics

Morphomolecular alterations in the skin mucosa of Atlantic salmon (Salmo salar) after exposure to peracetic acid-based disinfectant

(2020) Carlo C. Lazado et al.   Aquaculture Reports

Linking genomics and fish conservation decision making: a review

(2020) Thaïs A. Bernos et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Variation in juvenile Chinook salmon (Oncorhynchus tshawytscha ) transcription profiles among and within eight population crosses from British Columbia, Canada

(2019) S.D. Toews et al.   MOLECULAR ECOLOGY

Transcriptional Basis of Copper-Induced Olfactory Impairment in the Sea Lamprey, a Primitive Invasive Fish

(2019) Jenna Jones et al.   G3-Genes Genomes Genetics

NanoPipe—a web server for nanopore MinION sequencing data analysis

(2019) Victoria Shabardina et al.   GigaScience

Adaptation to climate change through genetic accommodation and assimilation of plastic phenotypes

(2019) Morgan Kelly   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Use of mucus as a non-invasive sampling method for DNA barcoding of stingrays and skates (batoid elasmobranchs)

(2019) Rodrigo R. Domingues et al.   JOURNAL OF FISH BIOLOGY

EcoToxChip: A next-generation toxicogenomics tool for chemical prioritization and environmental management

(2019) Niladri Basu et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis, immune and hypoxia related genes

(2019) M. Carla Piazzon et al.   BMC GENOMICS

Divergent transcriptomic signatures in response to salinity exposure in two populations of an estuarine fish

(2019) Ken M. Jeffries et al.   Evolutionary Applications

Genetics and telemetry indicate unexpected movements among structured populations for Brachyplatystoma platynemum in the Amazon

(2019) Lisiane Hahn et al.   JOURNAL OF FISH BIOLOGY

In vivo solid-phase microextraction sampling combined with metabolomics and toxicological studies for the non-lethal monitoring of the exposome in fish tissue

(2019) Anna Roszkowska et al.   ENVIRONMENTAL POLLUTION

Pathogen exposure disrupts an organism's ability to cope with thermal stress

(2019) Tobias E. Hector et al.   GLOBAL CHANGE BIOLOGY

A comparison of non‐lethal and destructive methods for broad‐based infectious agent screening of Chinook Salmon using high‐throughput qPCR

(2019) Amy K. Teffer et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Salmonid gene expression biomarkers indicative of physiological responses to changes in salinity and temperature, but not dissolved oxygen

(2019) Aimee Lee S. Houde et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Cumulative effects of thermal and fisheries stressors reveal sex-specific effects on infection development and early mortality of adult coho salmon (Oncorhynchus kisutch)

(2019) Amy Kathryn Teffer et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Mucus phosphoproteins as an indirect measure of endocrine disruption in native small-bodied freshwater fish, exposed to wastewater treatment plant and pulp and paper mill effluents

(2019) Paulina Bahamonde et al.   GAYANA

Endangered wild salmon infected by newly discovered viruses

(2019) Gideon J Mordecai et al.   eLife

Release and degradation of environmental DNA and RNA in a marine system

(2019) Susanna A. Wood et al.   SCIENCE OF THE TOTAL ENVIRONMENT

F2-isoprostanes in Fish mucus: A new, non-invasive method for analyzing a biomarker of oxidative stress

(2019) Patrique Bulloch et al.   CHEMOSPHERE

Differential regulation of select osmoregulatory genes and Na+/K+-ATPase paralogs may contribute to population differences in salinity tolerance in a semi-anadromous fish

(2019) Paige C. Mundy et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Infections, fisheries capture, temperature and host responses: multi-stressor influences on survival and behaviour of adult Chinook salmon

(2018) Amy K. Teffer et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Epigenetics in teleost fish: From molecular mechanisms to physiological phenotypes

(2018) Carol Best et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Molecular evolution and expression of oxygen transport genes in livebearing fishes (Poeciliidae) from hydrogen sulfide rich springs

(2018) Nicholas Barts et al.   GENOME

The utility of transcriptomics in fish conservation

(2018) Richard E. Connon et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Evaluation and application of BIOPOLE, a biopsy device for in situ non-lethal tissue extraction for fishes

(2018) JG Smith et al.   MARINE ECOLOGY PROGRESS SERIES

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

(2018) Kris A. Christensen et al.   PLoS One

Transcriptome response of Atlantic salmon (Salmo salar ) to competition with ecologically similar non-native species

(2018) Xiaoping He et al.   Ecology and Evolution

Evaluation and application of BIOPOLE, a biopsy device for in situ non-lethal tissue extraction for fishes

(2018) JG Smith et al.   MARINE ECOLOGY PROGRESS SERIES

Joining the dots between omics and environmental management

(2018) Kenneth MY Leung   Integrated Environmental Assessment and Management

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

Developing specific molecular biomarkers for thermal stress in salmonids

(2018) Arash Akbarzadeh et al.   BMC GENOMICS

Blood Transcriptomics Analysis of Fish Exposed to Perfluoro Alkyls Substances: Assessment of a Non-Lethal Sampling Technique for Advancing Aquatic Toxicology Research

(2018) Ignacio A. Rodríguez-Jorquera et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fisheries capture and infectious agents are associated with travel rate and survival of Chinook salmon during spawning migration

(2018) Arthur L. Bass et al.   FISHERIES RESEARCH

Identification of molecular stress indicators in pikeperch Sander lucioperca correlating with rising water temperatures

(2018) Fabian Swirplies et al.   AQUACULTURE

High-resolution mass spectrometry of skin mucus for monitoring physiological impacts and contaminant biotransformation products in fathead minnows exposed to wastewater effluent

(2017) Jonathan D. Mosley et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Plasticity in gene transcription explains the differential performance of two invasive fish species

(2017) Kyle W. Wellband et al.   Evolutionary Applications

Transcriptomics in toxicology

(2017) Pius Joseph   FOOD AND CHEMICAL TOXICOLOGY

Gene expression profiling of whole blood cells supports a more efficient mitochondrial respiration in hypoxia-challenged gilthead sea bream (Sparus aurata)

(2017) Juan Antonio Martos-Sitcha et al.   Frontiers in Zoology

Environmental and genetic determinants of transcriptional plasticity in Chinook salmon

(2017) Kyle W. Wellband et al.   HEREDITY

Validating fin tissue as a non-lethal proxy to liver and muscle tissue for stable isotope analysis of yellow perch (Perca flavescens)

(2017) Meagan McCloskey et al.   ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES

Telemetry and genetic data characterize lake sturgeon (Acipenser fulvescens Rafinesque, 1817) breeding ecology and spawning site fidelity in Green Bay Rivers of Lake Michigan

(2017) M. C. Donofrio et al.   JOURNAL OF APPLIED ICHTHYOLOGY

The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish

(2017) Courtney N. Passow et al.   MOLECULAR ECOLOGY

Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char

(2017) Jean-Sébastien Moore et al.   MOLECULAR ECOLOGY

Application of environmental DNA analysis to inform invasive fish eradication operations

(2017) Phillip I. Davison et al.   NATURWISSENSCHAFTEN

Application of environmental DNA analysis to inform invasive fish eradication operations

(2017) Phillip I. Davison et al.   Science of Nature

Capture severity, infectious disease processes and sex influence post-release mortality of sockeye salmon bycatch

(2017) Amy K. Teffer et al.   Conservation Physiology

Molecular indices of viral disease development in wild migrating salmon†

(2017) Kristina M. Miller et al.   Conservation Physiology

Transcriptome patterns and blood physiology associated with homing success of sockeye salmon during their final stage of marine migration

(2017) S. Matthew Drenner et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications

(2017) Xavier Pochon et al.   PLoS One

Lasting effects of butyrate and low FM/FO diets on growth performance, blood haematology/biochemistry and molecular growth-related markers in gilthead sea bream (Sparus aurata)

(2016) Laura Benedito-Palos et al.   AQUACULTURE

Multivariate analysis of biochemical responses using non-invasive methods to evaluate the health status of the endangered blackfin goodeid ( Girardinichthys viviparus )

(2016) Ricardo Dzul-Caamal et al.   ECOLOGICAL INDICATORS

High Conservation in Transcriptomic and Proteomic Response of White Sturgeon to Equipotent Concentrations of 2,3,7,8-TCDD, PCB 77, and Benzo[a]pyrene

(2016) Jon A. Doering et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Stress and immune responses in skin of turbot (Scophthalmus maximus) under different stocking densities

(2016) Rui Jia et al.   FISH & SHELLFISH IMMUNOLOGY

Assessing the suitability of a non-lethal biopsy punch for sampling fish muscle tissue

(2016) C. J. Henderson et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Effects of high temperatures on threatened estuarine fishes during periods of extreme drought

(2016) Ken M. Jeffries et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Multi-tissue transcriptome profiles for coho salmon ( Oncorhynchus kisutch ), a species undergoing rediploidization following whole-genome duplication

(2016) Jin-Hyoung Kim et al.   Marine Genomics

Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application

(2016) Brittany A. Garner et al.   TRENDS IN ECOLOGY & EVOLUTION

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Expression profiling analysis of immune-related genes in channel catfish (Ictalurus punctatus) skin mucus following Flavobacterium columnare challenge

(2015) Yichao Ren et al.   FISH & SHELLFISH IMMUNOLOGY

Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses

(2015) Marta Andres-Terre et al.   IMMUNITY

Non-lethal sampling of lake sturgeon for stable isotope analysis: Comparing pectoral fin-clip and dorsal muscle for use in trophic studies

(2015) A. Smith et al.   JOURNAL OF GREAT LAKES RESEARCH

Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?: Table 1.

(2015) Melissa B. DeBiasse et al.   JOURNAL OF HEREDITY

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

(2015) Mariano Alvarez et al.   MOLECULAR ECOLOGY

Stable isotope signatures and trophic-step fractionation factors of fish tissues collected as non-lethal surrogates of dorsal muscle

(2015) Georgina M. A. Busst et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis)

(2015) Huamei Yue et al.   PLoS One

Unraveling the Molecular Signatures of Oxidative Phosphorylation to Cope with the Nutritionally Changing Metabolic Capabilities of Liver and Muscle Tissues in Farmed Fish

(2015) Azucena Bermejo-Nogales et al.   PLoS One

Transcriptional profiling of two Atlantic salmon strains: implications for reintroduction into Lake Ontario

(2014) Xiaoping He et al.   CONSERVATION GENETICS

Development of a non-lethal method for evaluating transcriptomic endpoints in Arctic grayling (Thymallus arcticus)

(2014) Nik Veldhoen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Fish fins and scales as non-lethally sampled tissues for stable isotope analysis in five fish species of north – eastern Spain

(2014) Oriol Cano-Rocabayera et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Infectious disease, shifting climates, and opportunistic predators: cumulative factors potentially impacting wild salmon declines

(2014) Kristina M. Miller et al.   Evolutionary Applications

Non-lethal gill biopsy of juvenile hybrid sturgeon (Acipenser ruthenus♀ × A. schrenckii♂): validity and impact on growth and osmoregulation

(2014) F. Zhao et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Transcriptional Assessment by Microarray Analysis and Large-Scale Meta-analysis of the Metabolic Capacity of Cardiac and Skeletal Muscle Tissues to Cope With Reduced Nutrient Availability in Gilthead Sea Bream (Sparus aurata L.)

(2014) Josep A. Calduch-Giner et al.   MARINE BIOTECHNOLOGY

Immune response genes and pathogen presence predict migration survival in wild salmon smolts

(2014) Ken M. Jeffries et al.   MOLECULAR ECOLOGY

Arachidonic Acid Enhances Turnover of the Dermal Skeleton: Studies on Zebrafish Scales

(2014) Erik de Vrieze et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

The role of biomarkers in the assessment of aquatic ecosystem health

(2014) Sharon E Hook et al.   Integrated Environmental Assessment and Management

Simultaneous quantification of Pacific ciguatoxins in fish blood using liquid chromatography–tandem mass spectrometry

(2013) Yim Ling Mak et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Minimally invasive transcriptome profiling in salmon: Detection of biological response in rainbow trout caudal fin following exposure to environmental chemical contaminants

(2013) Nik Veldhoen et al.   AQUATIC TOXICOLOGY

Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

(2013) Michele Vidotto et al.   BMC GENOMICS

Implementation of a Non-lethal Biopsy Punch Monitoring Program for Mercury in Smallmouth Bass, Micropterus dolomieu Lacepède, from the Eleven Point River, Missouri

(2013) J. R. Ackerson et al.   BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

A validation of parentage-based tagging using hatchery steelhead in the Snake River basin

(2013) Craig A. Steele et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Detection of Asian carp DNA as part of a Great Lakes basin-wide surveillance program

(2013) Christopher L. Jerde et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Transcriptomic responses to high water temperature in two species of Pacific salmon

(2013) Ken M. Jeffries et al.   Evolutionary Applications

Prednisolone induces osteoporosis-like phenotype in regenerating zebrafish scales

(2013) E. de Vrieze et al.   OSTEOPOROSIS INTERNATIONAL

Deep RNA Sequencing of the Skeletal Muscle Transcriptome in Swimming Fish

(2013) Arjan P. Palstra et al.   PLoS One

Linking genetic assignment tests with telemetry enhances understanding of spawning migration and homing in sea trout Salmo trutta L.

(2012) Johan Östergren et al.   HYDROBIOLOGIA

Conservation physiology in practice: how physiological knowledge has improved our ability to sustainably manage Pacific salmon during up-river migration

(2012) S. J. Cooke et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka)

(2012) Ken M. Jeffries et al.   Ecology and Evolution

Detection of outlier loci and their utility for fisheries management

(2011) Michael A. Russello et al.   Evolutionary Applications

Temporal changes in blood variables during final maturation and senescence in male sockeye salmon Oncorhynchus nerka: reduced osmoregulatory ability can predict mortality

(2011) K. M. Jeffries et al.   JOURNAL OF FISH BIOLOGY

A non-lethal sampling method for stable carbon and nitrogen isotope studies of tropical fishes

(2011) Timothy D. Jardine et al.   MARINE AND FRESHWATER RESEARCH

Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration

(2011) TYLER G. EVANS et al.   MOLECULAR ECOLOGY

THE EFFECTIVENESS OF TISSUE BIOPSY AS A MEANS OF ASSESSING THE PHYSIOLOGICAL CONSEQUENCES OF FISHWAY PASSAGE

(2011) L. B. Pon et al.   RIVER RESEARCH AND APPLICATIONS

Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon

(2011) K. M. Miller et al.   SCIENCE

Developing a Mechanistic Understanding of Fish Migrations by Linking Telemetry with Physiology, Behavior, Genomics and Experimental Biology: An Interdisciplinary Case Study on Adult Fraser River Sockeye Salmon

(2010) Steven J. Cooke et al.   FISHERIES

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Validation of swabs as a non-destructive and relatively non-invasive DNA sampling method in fish

(2010) A. L. LE VIN et al.   Molecular Ecology Resources

Transcriptome responses to heat stress in the nucleated red blood cells of the rainbow trout (Oncorhynchus mykiss)

(2010) Johanne M. Lewis et al.   PHYSIOLOGICAL GENOMICS

Gene expression profiling and environmental contaminant assessment of migrating Pacific salmon in the Fraser River watershed of British Columbia

(2009) Nik Veldhoen et al.   AQUATIC TOXICOLOGY

Animal performance and stress: responses and tolerance limits at different levels of biological organisation

(2009) Karin S. Kassahn et al.   BIOLOGICAL REVIEWS

Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery

(2009) Matthew C Hale et al.   BMC GENOMICS

Nonlethal Sampling of Fish Caudal Fins Yields Valuable Stable Isotope Data for Threatened and Endangered Fishes

(2009) Beth L. Sanderson et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Assessment of an underwater biopsy probe for collecting teleost fish tissue samples

(2008) RD Evans   MARINE ECOLOGY PROGRESS SERIES