Developing specific molecular biomarkers for thermal stress in salmonids

The utility of transcriptomics in fish conservation

(2018) Richard E. Connon et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Heat shock protein 47 and 65-kDa FK506-binding protein weakly but synergistically interact during collagen folding in the endoplasmic reticulum

(2017) Yoshihiro Ishikawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Capture severity, infectious disease processes and sex influence post-release mortality of sockeye salmon bycatch

(2017) Amy K. Teffer et al.   Conservation Physiology

Molecular indices of viral disease development in wild migrating salmon†

(2017) Kristina M. Miller et al.   Conservation Physiology

Transcriptome patterns and blood physiology associated with homing success of sockeye salmon during their final stage of marine migration

(2017) S. Matthew Drenner et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Acclimation of killifish to thermal extremes of hot spring: Transcription of gonadal and liver heat shock genes

(2016) Arash Akbarzadeh et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Thermal stress and the heat shock response in embryonic and young of the year juvenile lake whitefish

(2016) Daniel I. Stefanovic et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

hsp90 and hsp47 appear to play an important role in minnow Puntius sophore for surviving in the hot spring run-off aquatic ecosystem

(2016) Arabinda Mahanty et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Comparative physiological, biochemical and molecular thermal stress response profiles for two unionid freshwater mussel species

(2016) Samantha L. Payton et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Acute Exposure to Tris(1,3-dichloro-2-propyl) Phosphate (TDCIPP) Causes Hepatic Inflammation and Leads to Hepatotoxicity in Zebrafish

(2016) Chunsheng Liu et al.   Scientific Reports

Upregulation of cytochrome c oxidase subunit 6b1 (Cox6b1) and formation of mitochondrial supercomplexes: implication of Cox6b1 in the effect of calorie restriction

(2015) Sang-Eun Kim et al.   AGE

Molecular cloning and sequence analysis of selenoprotein W gene and its mRNA expression patterns in response to metabolic status and cadmium exposure in goldfish, Carassius auratus

(2015) Wenbo Chen et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Effects of heat stress on respiratory burst, oxidative damage and SERPINH1 (HSP47) mRNA expression in rainbow trout Oncorhynchus mykiss

(2015) Yanni Wang et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout ( Oncorhynchus mykiss gairdneri )

(2015) Michael R. Garvin et al.   Genome Biology and Evolution

Transcriptomic responses to environmental temperature in eurythermal and stenothermal fishes

(2015) C. A. Logan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Warmer water temperature results in oxidative damage in an Antarctic fish, the bald notothen

(2015) Bethanie Carney Almroth et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Impact of Thermal Stress on Kidney-Specific Gene Expression in Farmed Regional and Imported Rainbow Trout

(2015) Marieke Verleih et al.   MARINE BIOTECHNOLOGY

Linking transcriptional responses to organismal tolerance reveals mechanisms of thermal sensitivity in a mesothermal endangered fish

(2015) Lisa M. Komoroske et al.   MOLECULAR ECOLOGY

NF-κB signaling is essential for resistance to heat stress-induced early stage apoptosis in human umbilical vein endothelial cells

(2015) Yanan Liu et al.   Scientific Reports

Transcriptional Response to Acute Thermal Exposure in Juvenile Chinook Salmon Determined by RNAseq

(2015) Katharine M. H. Tomalty et al.   G3-Genes Genomes Genetics

Transcriptome Profiling and Molecular Pathway Analysis of Genes in Association with Salinity Adaptation in Nile Tilapia Oreochromis niloticus

(2015) Zhixin Xu et al.   PLoS One

Spatial Variation in Transcript and Protein Abundance of Atlantic Salmon during Feeding Migration in the Baltic Sea

(2014) Mirella Kanerva et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Infectious disease, shifting climates, and opportunistic predators: cumulative factors potentially impacting wild salmon declines

(2014) Kristina M. Miller et al.   Evolutionary Applications

HSP47 and FKBP65 cooperate in the synthesis of type I procollagen

(2014) Ivan Duran et al.   HUMAN MOLECULAR GENETICS

Facing warm temperatures during migration: cardiac mRNA responses of two adultOncorhynchus nerkapopulations to warming and swimming challenges

(2014) K. Anttila et al.   JOURNAL OF FISH BIOLOGY

Immune response genes and pathogen presence predict migration survival in wild salmon smolts

(2014) Ken M. Jeffries et al.   MOLECULAR ECOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology

(2013) Pål A Olsvik et al.   BMC GENOMICS

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

Transcriptomic responses to high water temperature in two species of Pacific salmon

(2013) Ken M. Jeffries et al.   Evolutionary Applications

Involvement of heat shock protein 47 in Schistosoma japonicum-induced hepatic fibrosis in mice

(2013) Jia-Quan Huang et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

What is environmental stress? Insights from fish living in a variable environment

(2013) P. M. Schulte   JOURNAL OF EXPERIMENTAL BIOLOGY

Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer)

(2013) James R. Newton et al.   Marine Genomics

Thermal adaptation and acclimation of ectotherms from differing aquatic climates

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

(2013) Shikai Liu et al.   PHYSIOLOGICAL GENOMICS

Translational reprogramming in cellular stress response

(2013) Botao Liu et al.   Wiley Interdisciplinary Reviews-RNA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

NF- B regulates protein quality control after heat stress through modulation of the BAG3-HspB8 complex

(2012) M. Nivon et al.   JOURNAL OF CELL SCIENCE

Molecular basis for the action of the collagen-specific chaperone Hsp47/SERPINH1 and its structure-specific client recognition

(2012) C. Widmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka)

(2012) Ken M. Jeffries et al.   Ecology and Evolution

Effects of thermal acclimation on transcriptional responses to acute heat stress in the eurythermal fish Gillichthys mirabilis (Cooper)

(2011) Cheryl A. Logan et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Oxidative stress is transient and tissue specific during cold acclimation of threespine stickleback

(2011) A. R. Kammer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration

(2011) TYLER G. EVANS et al.   MOLECULAR ECOLOGY

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Identification of genes associated with heat tolerance in Arctic charr exposed to acute thermal stress

(2011) Nicole L. Quinn et al.   PHYSIOLOGICAL GENOMICS

Ribosomal genes and heat shock proteins as putative markers for chronic, sublethal heat stress in Arctic charr: applications for aquaculture and wild fish

(2011) Nicole L. Quinn et al.   PHYSIOLOGICAL GENOMICS

Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon

(2011) K. M. Miller et al.   SCIENCE

Transcriptional responses to thermal acclimation in the eurythermal fish Gillichthys mirabilis (Cooper 1864)

(2010) Cheryl A. Logan et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Environmentally induced oxidative stress in aquatic animals

(2010) Volodymyr I. Lushchak   AQUATIC TOXICOLOGY

Heat-shock responsive genes identified and validated in Atlantic cod (Gadus morhua) liver, head kidney and skeletal muscle using genomic techniques

(2010) Tiago S Hori et al.   BMC GENOMICS

Effect of moderate hypoxia at three acclimation temperatures on stress responses in Atlantic cod with different haemoglobin types

(2010) Caroline Methling et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Gene expression changes in female zebrafish (Danio rerio) brain in response to acute exposure to methylmercury

(2010) Catherine A. Richter et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Effects of river temperature and climate warming on stock-specific survival of adult migrating Fraser River sockeye salmon (Oncorhynchus nerka)

(2010) EDUARDO G. MARTINS et al.   GLOBAL CHANGE BIOLOGY

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Heat shock proteins (chaperones) in fish and shellfish and their potential role in relation to fish health: a review

(2010) R J Roberts et al.   JOURNAL OF FISH DISEASES

HSP90 at the hub of protein homeostasis: emerging mechanistic insights

(2010) Mikko Taipale et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Heat shock response of killifish (Fundulus heteroclitus): candidate gene and heterologous microarray approaches

(2010) Timothy M. Healy et al.   PHYSIOLOGICAL GENOMICS

Transcriptome responses to heat stress in the nucleated red blood cells of the rainbow trout (Oncorhynchus mykiss)

(2010) Johanne M. Lewis et al.   PHYSIOLOGICAL GENOMICS

Hsp90 and Environmental Stress Transform the Adaptive Value of Natural Genetic Variation

(2010) D. F. Jarosz et al.   SCIENCE

A proteomic analysis of green and white sturgeon larvae exposed to heat stress and selenium

(2010) Frédéric Silvestre et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Selenoprotein expression and function—Selenoprotein W

(2009) P.D. Whanger   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Animal performance and stress: responses and tolerance limits at different levels of biological organisation

(2009) Karin S. Kassahn et al.   BIOLOGICAL REVIEWS

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

Genomic approaches in the identification of hypoxia biomarkers in model fish species

(2009) Ziping Zhang et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Seasonal influence on heat shock protein 90α and heat shock factor 1 expression during oxidative stress in fish hepatocytes from polluted estuary

(2009) Ekambaram Padmini et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Salmon spawning migration: Metabolic shifts and environmental triggers

(2008) Kristina M. Miller et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

What is principal component analysis?

(2008) Markus Ringnér   NATURE BIOTECHNOLOGY

cDNA microarray analysis reveals the capacity of the cold-adapted Antarctic fish Trematomus bernacchii to alter gene expression in response to heat stress

(2008) Bradley A. Buckley et al.   POLAR BIOLOGY

HSP90-buffered genetic variation is common in Arabidopsis thaliana

(2008) T. A. Sangster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sparse principal component analysis via regularized low rank matrix approximation

(2007) Haipeng Shen et al.   JOURNAL OF MULTIVARIATE ANALYSIS