Plasticity in gene transcription explains the differential performance of two invasive fish species

Role of genomics and transcriptomics in selection of reintroduction source populations

(2016) Xiaoping He et al.   CONSERVATION BIOLOGY

Niche plasticity in invasive fishes in the Great Lakes

(2015) Harri Pettitt-Wade et al.   BIOLOGICAL INVASIONS

Transcriptomic responses to environmental temperature in eurythermal and stenothermal fishes

(2015) C. A. Logan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Evolution of phenotypic plasticity in colonizing species

(2015) Russell Lande   MOLECULAR ECOLOGY

Phenotypic plasticity in gene expression contributes to divergence of locally adapted populations ofFundulus heteroclitus

(2015) David I. Dayan et al.   MOLECULAR ECOLOGY

Linking transcriptional responses to organismal tolerance reveals mechanisms of thermal sensitivity in a mesothermal endangered fish

(2015) Lisa M. Komoroske et al.   MOLECULAR ECOLOGY

Among-lake reciprocal transplants induce convergent expression of immune genes in threespine stickleback

(2015) William E. Stutz et al.   MOLECULAR ECOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Persistence of an invasive fish (Neogobius melanostomus) in a contaminated ecosystem

(2014) Erin S. McCallum et al.   BIOLOGICAL INVASIONS

Transcriptional profiling of two Atlantic salmon strains: implications for reintroduction into Lake Ontario

(2014) Xiaoping He et al.   CONSERVATION GENETICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Geographical range, heat tolerance and invasion success in aquatic species

(2013) A. E. Bates et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Salinity- and population-dependent genome regulatory response during osmotic acclimation in the killifish (Fundulus heteroclitus) gill

(2012) A. Whitehead et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Salinity tolerance of the invasive round goby: Experimental implications for seawater ballast exchange and spread to North American estuaries

(2012) Susanne I. Karsiotis et al.   JOURNAL OF GREAT LAKES RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Further studies of mitochondrial genome variability in Ponto-Caspian Proterorhinus species (Actinopterygii: Perciformes: Gobiidae) and their taxonomic implications

(2011) Pavel A. Sorokin et al.   ACTA ICHTHYOLOGICA ET PISCATORIA

Do invasive species show higher phenotypic plasticity than native species and, if so, is it adaptive? A meta-analysis

(2011) Amy Michelle Davidson et al.   ECOLOGY LETTERS

Seasonal abundance and movement of the invasive round goby (Neogobius melanostomus) on rocky substrate in the Duluth-Superior Harbor of Lake Superior

(2011) Michael P. Lynch et al.   ECOLOGY OF FRESHWATER FISH

Multispecies comparison reveals that invasive and native plants differ in their traits but not in their plasticity

(2011) Oscar Godoy et al.   FUNCTIONAL ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Invasive plants do not display greater phenotypic plasticity than their native or non-invasive counterparts: a meta-analysis

(2011) Kattia Palacio-López et al.   OIKOS

Identification of genes associated with heat tolerance in Arctic charr exposed to acute thermal stress

(2011) Nicole L. Quinn et al.   PHYSIOLOGICAL GENOMICS

Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon

(2011) K. M. Miller et al.   SCIENCE

A proposed unified framework for biological invasions

(2011) Tim M. Blackburn et al.   TRENDS IN ECOLOGY & EVOLUTION

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

(2010) G. Yu et al.   BIOINFORMATICS

Rapid evolution of osmoregulatory function by modification of gene transcription in steelhead trout

(2010) Tutku Aykanat et al.   GENETICA

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative transcriptomics implicates mechanisms of evolved pollution tolerance in a killifish population

(2010) A. WHITEHEAD et al.   MOLECULAR ECOLOGY

Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)

(2010) BRENT L. LOCKWOOD et al.   MOLECULAR ECOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Evolution and phylogeography of the tubenose goby genus Proterorhinus (Gobiidae: Teleostei): evidence for new cryptic species

(2009) MATTHEW E. NEILSON et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Rapid evolution in introduced species, ‘invasive traits’ and recipient communities: challenges for predicting invasive potential

(2009) Kenneth D. Whitney et al.   DIVERSITY AND DISTRIBUTIONS

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Ancient divisions, recent expansions: phylogeography and population genetics of the round gobyApollonia melanostoma

(2008) JOSHUA E. BROWN et al.   MOLECULAR ECOLOGY

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Gene–Environment Interaction in Yeast Gene Expression

(2008) Erin N Smith et al.   PLOS BIOLOGY

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY