Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation

clinker & clustermap.js: automatic generation of gene cluster comparison figures

(2021) Cameron L M Gilchrist et al.   BIOINFORMATICS

Collagen Binding Proteins of Gram-Positive Pathogens

(2021) Srishtee Arora et al.   Frontiers in Microbiology

Microbial evolution and transitions along the parasite–mutualist continuum

(2021) Georgia C. Drew et al.   NATURE REVIEWS MICROBIOLOGY

Cocultivation of an ultrasmall environmental parasitic bacterium with lytic ability against bacteria associated with wastewater foams

(2021) Steven Batinovic et al.   Nature Microbiology

Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria

(2021) Alexander L. Jaffe et al.   mBio

Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts

(2020) B. Bor et al.   JOURNAL OF DENTAL RESEARCH

Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts

(2020) Jeffrey S. McLean et al.   Cell Reports

The saccharibacterium TM7x elicits differential responses across its host range

(2020) Daniel R. Utter et al.   ISME Journal

Comparison of Subgingival and Buccal Mucosa Microbiome in Chronic and Aggressive Periodontitis: A Pilot Study

(2019) Yiping Wei et al.   Frontiers in Cellular and Infection Microbiology

Saccharibacteria (TM7) in the Human Oral Microbiome

(2019) B. Bor et al.   JOURNAL OF DENTAL RESEARCH

Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome

(2019) David B Bernstein et al.   eLife

Propionibacterium acnes and Acne Vulgaris: New Insights from the Integration of Population Genetic, Multi-Omic, Biochemical and Host-Microbe Studies

(2019) Joseph McLaughlin et al.   Microorganisms

Targeted isolation and cultivation of uncultivated bacteria by reverse genomics

(2019) Karissa L. Cross et al.   NATURE BIOTECHNOLOGY

Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life

(2018) Cindy J. Castelle et al.   CELL

An experimental murine model to study periodontitis

(2018) Julie Marchesan et al.   Nature Protocols

Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between Actinomyces odontolyticus and Its Saccharibacteria epibiont, a Nanosynbacter lyticus Strain, TM7x

(2018) Joseph K. Bedree et al.   Frontiers in Microbiology

Rapid evolution of decreased host susceptibility drives a stable relationship between ultrasmall parasite TM7x and its bacterial host

(2018) Batbileg Bor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers’ diarrhea

(2018) Qiyun Zhu et al.   Microbiome

New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract

(2018) Isabel F. Escapa et al.   mSystems

A tale of two risks: smoking, diabetes and the subgingival microbiome

(2017) Sukirth M Ganesan et al.   ISME Journal

Are humans prone to autoimmunity? Implications from evolutionary changes in hominin sialic acid biology

(2017) Ajit Varki   JOURNAL OF AUTOIMMUNITY

Smoking May Lead to Marginal Bone Loss Around Non-Submerged Implants During Bone Healing by Altering Salivary Microbiome: A Prospective Study

(2017) Xiaobo Duan et al.   JOURNAL OF PERIODONTOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Biogeography of a human oral microbiome at the micron scale

(2016) Jessica L. Mark Welch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The healthy human microbiome

(2016) Jason Lloyd-Price et al.   Genome Medicine

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Actinomyces and Related Organisms in Human Infections

(2015) Eija Könönen et al.   CLINICAL MICROBIOLOGY REVIEWS

Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont Actinomyces

(2015) Batbileg Bor et al.   MICROBIAL ECOLOGY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Subgingival Microbial Communities in Leukocyte Adhesion Deficiency and Their Relationship with Local Immunopathology

(2015) Niki M. Moutsopoulos et al.   PLoS Pathogens

Propionibacterium acnes: from Commensal to Opportunistic Biofilm-Associated Implant Pathogen

(2014) Y. Achermann et al.   CLINICAL MICROBIOLOGY REVIEWS

Porphyromonas gingivalis Exacerbates Ligature-Induced, RANKL-Dependent Alveolar Bone Resorption via Differential Regulation of Toll-Like Receptor 2 (TLR2) and TLR4

(2014) Jiang Lin et al.   INFECTION AND IMMUNITY

The inflammophilic character of the periodontitis-associated microbiota

(2014) G. Hajishengallis   Molecular Oral Microbiology

Human and Helicobacter pylori coevolution shapes the risk of gastric disease

(2014) N. Kodaman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

(2014) Xuesong He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome

(2014) A. M. Eren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial community composition of chronic periodontitis and novel oral sampling sites for detecting disease indicators

(2014) Vaia Galimanas et al.   Microbiome

Induction of Bone Loss by Pathobiont-Mediated Nod1 Signaling in the Oral Cavity

(2013) Yizu Jiao et al.   Cell Host & Microbe

The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation

(2013) Loreto Abusleme et al.   ISME Journal

Sialic Acid Catabolism in Staphylococcus aureus

(2013) M. E. Olson et al.   JOURNAL OF BACTERIOLOGY

Optimization of the ligature-induced periodontitis model in mice

(2013) Toshiharu Abe et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Peptidoglycan of Actinomyces naeslundii induces inflammatory cytokine production and stimulates osteoclastogenesis in alveolar bone resorption

(2012) Takenori Sato et al.   ARCHIVES OF ORAL BIOLOGY

Lipoproteins of Actinomyces viscosus induce inflammatory responses through TLR2 in human gingival epithelial cells and macrophages

(2012) Eri Shimada et al.   MICROBES AND INFECTION

Cell wall proteome of Clostridium thermocellum and detection of glycoproteins

(2012) Tingting Yu et al.   MICROBIOLOGICAL RESEARCH

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease

(2012) Bo Liu et al.   PLoS One

Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing

(2011) Ann L Griffen et al.   ISME Journal

Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging

(2011) A. M. Valm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis

(2011) Shi Huang et al.   BMC Oral Health

Cell wall proteome analysis of Mycobacterium smegmatis strain MC2 155

(2010) Zhiguo He et al.   BMC MICROBIOLOGY

The use of rodent models to investigate host-bacteria interactions related to periodontal diseases

(2010) Dana T. Graves et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS