Gene regulatory network analysis defines transcriptome landscape with alternative splicing of human umbilical vein endothelial cells during replicative senescence
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Gene regulatory network analysis defines transcriptome landscape with alternative splicing of human umbilical vein endothelial cells during replicative senescence
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 22, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-12-03
DOI
10.1186/s12864-021-08185-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Alternative splicing in aging and longevity
- (2019) Malini Bhadra et al. HUMAN GENETICS
- Hallmarks of Cellular Senescence
- (2018) Alejandra Hernandez-Segura et al. TRENDS IN CELL BIOLOGY
- Redox Regulation of Mitochondrial Fission Protein Drp1 by Protein Disulfide Isomerase Limits Endothelial Senescence
- (2018) Young-Mee Kim et al. Cell Reports
- Single senescent cell sequencing reveals heterogeneity in senescent cells induced by telomere erosion
- (2018) Huanyin Tang et al. Protein & Cell
- An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
- (2017) Javier Tapial et al. GENOME RESEARCH
- Senescence and aging: Causes, consequences, and therapeutic avenues
- (2017) Domhnall McHugh et al. JOURNAL OF CELL BIOLOGY
- Human Ageing Genomic Resources: new and updated databases
- (2017) Robi Tacutu et al. NUCLEIC ACIDS RESEARCH
- The Reactome Pathway Knowledgebase
- (2017) Antonio Fabregat et al. NUCLEIC ACIDS RESEARCH
- The matricellular protein TSP1 promotes human and mouse endothelial cell senescence through CD47 and Nox1
- (2017) Daniel N. Meijles et al. Science Signaling
- The matricellular protein TSP1 promotes human and mouse endothelial cell senescence through CD47 and Nox1
- (2017) Daniel N. Meijles et al. Science Signaling
- Increased expression of SIRT2 is a novel marker of cellular senescence and is dependent on wild type p53 status
- (2016) Tarique Anwar et al. CELL CYCLE
- Sirtuins in glucose and lipid metabolism
- (2016) Xin Ye et al. Oncotarget
- Telomere length regulates ISG15 expression in human cells
- (2016) Zhenjun Lou et al. Aging-US
- Conserved Senescence Associated Genes and Pathways in Primary Human Fibroblasts Detected by RNA-Seq
- (2016) S. Marthandan et al. PLoS One
- Global genome splicing analysis reveals an increased number of alternatively spliced genes with aging
- (2015) Sofía A. Rodríguez et al. AGING CELL
- Cellular and molecular biology of aging endothelial cells
- (2015) Anthony J. Donato et al. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY
- Alternative Splicing in the Mammalian Nervous System: Recent Insights into Mechanisms and Functional Roles
- (2015) Bushra Raj et al. NEURON
- Alternative Splicing Regulates Pluripotent State in Pluripotent Stem Cells
- (2015) Ling He et al. Current Stem Cell Research & Therapy
- A Highly Conserved Program of Neuronal Microexons Is Misregulated in Autistic Brains
- (2014) Manuel Irimia et al. CELL
- Gene expression profiling of replicative and induced senescence
- (2014) Maggie Purcell et al. CELL CYCLE
- Cellular senescence and its effector programs
- (2014) R. Salama et al. GENES & DEVELOPMENT
- Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances
- (2014) Jérôme D. Robin et al. GENES & DEVELOPMENT
- Cellular senescence: from physiology to pathology
- (2014) Daniel Muñoz-Espín et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- SIRT1 and other sirtuins in metabolism
- (2014) Hung-Chun Chang et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Causal analysis approaches in Ingenuity Pathway Analysis
- (2013) Andreas Krämer et al. BIOINFORMATICS
- Changes in splicing factor expression are associated with advancing age in man
- (2013) Alice C. Holly et al. MECHANISMS OF AGEING AND DEVELOPMENT
- SIRT6 protects human endothelial cells from DNA damage, telomere dysfunction, and senescence
- (2012) Anna Cardus et al. CARDIOVASCULAR RESEARCH
- Studying and modelling dynamic biological processes using time-series gene expression data
- (2012) Ziv Bar-Joseph et al. NATURE REVIEWS GENETICS
- RNA-Seq of Human Neurons Derived from iPS Cells Reveals Candidate Long Non-Coding RNAs Involved in Neurogenesis and Neuropsychiatric Disorders
- (2011) Mingyan Lin et al. PLoS One
- deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
- (2011) Andrew McPherson et al. PLoS Computational Biology
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs
- (2010) Srinivas Veerla et al. BMC GENOMICS
- The essence of senescence
- (2010) T. Kuilman et al. GENES & DEVELOPMENT
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Analysis and design of RNA sequencing experiments for identifying isoform regulation
- (2010) Yarden Katz et al. NATURE METHODS
- Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
- (2010) Daniele Merico et al. PLoS One
- Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes
- (2010) Tulika Prakash et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- Critical pathways in cellular senescence and immortalization revealed by gene expression profiling
- (2008) A L Fridman et al. ONCOGENE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started