LPI-deepGBDT: a multiple-layer deep framework based on gradient boosting decision trees for lncRNA–protein interaction identification

NPI-GNN: Predicting ncRNA–protein interactions with deep graph neural networks

(2021) Zi-Ang Shen et al.   BRIEFINGS IN BIOINFORMATICS

A novel Bcl-2 inhibitor, BM-1197, induces apoptosis in malignant lymphoma cells through the endogenous apoptotic pathway

(2020) Yue-Li Sun et al.   BMC CANCER

Predicting lncRNA-protein interactions by machine learning methods: a review

(2020) Zhi-Ping Liu   Current Bioinformatics

Predicting lncRNA–Protein Interactions With miRNAs as Mediators in a Heterogeneous Network Model

(2020) Yuan-Ke Zhou et al.   Frontiers in Genetics

Probing lncRNA–Protein Interactions: Data Repositories, Models, and Algorithms

(2020) Lihong Peng et al.   Frontiers in Genetics

MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs

(2020) Wei Wang et al.   BRIEFINGS IN BIOINFORMATICS

Long noncoding RNA GAS5 promotes microglial inflammatory response in Parkinson's disease by regulating NLRP3 pathway through sponging miR-223-3p

(2020) Wei Xu et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Multi-feature fusion for deep learning to predict plant lncRNA-protein interaction

(2020) Jael Sanyanda Wekesa et al.   GENOMICS

LMI-DForest: A deep forest model towards the prediction of lncRNA-miRNA interactions

(2020) Wei Wang et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

PlncRNADB: a repository of plant lncRNAs and lncRNA-RBP protein interactions

(2019) Youhuang Bai et al.   Current Bioinformatics

PyFeat: A Python-based Effective Feature Generation Tool for DNA, RNA, and Protein Sequences

(2019) Rafsanjani Muhammod et al.   BIOINFORMATICS

Noncoding RNAs Serve as Diagnosis and Prognosis Biomarkers for Hepatocellular Carcinoma

(2019) Chang Tan et al.   CLINICAL CHEMISTRY

LPI-IBNRA: Long Non-coding RNA-Protein Interaction Prediction Based on Improved Bipartite Network Recommender Algorithm

(2019) Guobo Xie et al.   Frontiers in Genetics

LPI-BLS: Predicting lncRNA–protein interactions with a broad learning system-based stacked ensemble classifier

(2019) Xiao-Nan Fan et al.   NEUROCOMPUTING

PredPRBA: Prediction of Protein-RNA Binding Affinity Using Gradient Boosted Regression Trees

(2019) Lei Deng et al.   Frontiers in Genetics

Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data

(2018) Anna Marco-Ramell et al.   BMC BIOINFORMATICS

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

IRWNRLPI: Integrating Random Walk and Neighborhood Regularized Logistic Matrix Factorization for lncRNA-Protein Interaction Prediction

(2018) Qi Zhao et al.   Frontiers in Genetics

Computational models for lncRNA function prediction and functional similarity calculation

(2018) Xing Chen et al.   Briefings in Functional Genomics

LPGNMF: Predicting Long Non-coding RNA and Protein Interaction Using Graph Regularized Nonnegative Matrix Factorization

(2018) Tianyi Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The Bipartite Network Projection Recommended Algorithm for predicting long non-coding RNA–protein interactions

(2018) Qi Zhao et al.   Molecular Therapy-Nucleic Acids

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

(2018) Wen Zhang et al.   PLoS Computational Biology

LPI-NRLMF: lncRNA-protein interaction prediction by neighborhood regularized logistic matrix factorization

(2017) Hongsheng Liu et al.   Oncotarget

Relevance search for predicting lncRNA–protein interactions based on heterogeneous network

(2016) Jianghong Yang et al.   NEUROCOMPUTING

Predicting Short-Term Subway Ridership and Prioritizing Its Influential Factors Using Gradient Boosting Decision Trees

(2016) Chuan Ding et al.   Sustainability

A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions

(2016) Mengqu Ge et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model

(2015) Ao Li et al.   Biomed Research International

Long non-coding RNA GAS5 regulates apoptosis in prostate cancer cell lines

(2013) M.R. Pickard et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

A critical role for the long non-coding RNA GAS5 in proliferation and apoptosis in non-small-cell lung cancer

(2013) Xuefei Shi et al.   MOLECULAR CARCINOGENESIS

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

NONCODEv4: exploring the world of long non-coding RNA genes

(2013) Chaoyong Xie et al.   NUCLEIC ACIDS RESEARCH

The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor

(2012) Zilian Cui et al.   UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONS

Overexpression of Long Non-coding RNA HOTAIR Predicts Tumor Recurrence in Hepatocellular Carcinoma Patients Following Liver Transplantation

(2011) Zhe Yang et al.   ANNALS OF SURGICAL ONCOLOGY

The relationship between Prostate CAncer gene 3 (PCA3) and prostate cancer significance

(2011) Hein van Poppel et al.   BJU INTERNATIONAL

GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer

(2008) M Mourtada-Maarabouni et al.   ONCOGENE