LPI-IBNRA: Long Non-coding RNA-Protein Interaction Prediction Based on Improved Bipartite Network Recommender Algorithm

Multivariate Information Fusion With Fast Kernel Learning to Kernel Ridge Regression in Predicting LncRNA-Protein Interactions

(2019) Cong Shen et al.   Frontiers in Genetics

Network-based method for mining novel HPV infection related genes using random walk with restart algorithm

(2018) Liucun Zhu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Predicting miRNA–disease association based on inductive matrix completion

(2018) Xing Chen et al.   BIOINFORMATICS

70ProPred: a predictor for discovering sigma70 promoters based on combining multiple features

(2018) Wenying He et al.   BMC Systems Biology

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

HLPI-Ensemble: Prediction of human lncRNA-protein interactions based on ensemble strategy

(2018) Huan Hu et al.   RNA Biology

EGBMMDA: Extreme Gradient Boosting Machine for MiRNA-Disease Association prediction

(2018) Xing Chen et al.   Cell Death & Disease

IRWNRLPI: Integrating Random Walk and Neighborhood Regularized Logistic Matrix Factorization for lncRNA-Protein Interaction Prediction

(2018) Qi Zhao et al.   Frontiers in Genetics

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

Computational models for lncRNA function prediction and functional similarity calculation

(2018) Xing Chen et al.   Briefings in Functional Genomics

RWLPAP: Random Walk for lncRNA-protein Associations Prediction

(2018) Qi Zhao et al.   PROTEIN AND PEPTIDE LETTERS

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

Sc-ncDNAPred: A Sequence-Based Predictor for Identifying Non-coding DNA in Saccharomyces cerevisiae

(2018) Wenying He et al.   Frontiers in Microbiology

The Bipartite Network Projection Recommended Algorithm for predicting long non-coding RNA–protein interactions

(2018) Qi Zhao et al.   Molecular Therapy-Nucleic Acids

FKL-Spa-LapRLS: an accurate method for identifying human microRNA-disease association

(2018) Limin Jiang et al.   BMC GENOMICS

Human Microbe-Disease Association Prediction Based on Adaptive Boosting

(2018) Li-Hong Peng et al.   Frontiers in Microbiology

Network-Based Methods for Prediction of Drug-Target Interactions

(2018) Zengrui Wu et al.   Frontiers in Pharmacology

Accurate Prediction of ncRNA-Protein Interactions From the Integration of Sequence and Evolutionary Information

(2018) Zhao-Hui Zhan et al.   Frontiers in Genetics

MDA-SKF: Similarity Kernel Fusion for Accurately Discovering miRNA-Disease Association

(2018) Limin Jiang et al.   Frontiers in Genetics

Predicting Diabetes Mellitus With Machine Learning Techniques

(2018) Quan Zou et al.   Frontiers in Genetics

LPI-ETSLP: lncRNA–protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction

(2017) Huan Hu et al.   Molecular BioSystems

SSCMDA: spy and super cluster strategy for MiRNA-disease association prediction

(2017) Qi Zhao et al.   Oncotarget

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

A novel approach based on KATZ measure to predict associations of human microbiota with non-infectious diseases

(2016) Xing Chen et al.   BIOINFORMATICS

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins

(2016) Sungyul Lee et al.   CELL

NPInter v3.0: an upgraded database of noncoding RNA-associated interactions

(2016) Yajing Hao et al.   Database-The Journal of Biological Databases and Curation

IRWRLDA: improved random walk with restart for lncRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

Editorial: Molecular Function and Regulation of Non-coding RNAs in Multifactorial Diseases

(2016) Mohammadreza Hajjari et al.   Frontiers in Genetics

A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions

(2016) Mengqu Ge et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information

(2015) V. Suresh et al.   NUCLEIC ACIDS RESEARCH

KATZLDA: KATZ measure for the lncRNA-disease association prediction

(2015) Xing Chen   Scientific Reports

Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model

(2015) Ao Li et al.   Biomed Research International

Regulation of Transcription by Long Noncoding RNAs

(2014) Roberto Bonasio et al.   Annual Review of Genetics

Predicting Essential Proteins Based on Weighted Degree Centrality

(2014) Xiwei Tang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Collaborative Recommend Algorithm Based on Bipartite Community

(2014) Yuchen Fu et al.   TheScientificWorldJOURNAL

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

lincRNAs: Genomics, Evolution, and Mechanisms

(2013) Igor Ulitsky et al.   CELL

Redundant correlation effect on personalized recommendation

(2013) Tian Qiu et al.   COMPUTER PHYSICS COMMUNICATIONS

Long Non-Coding RNAs and Complex Human Diseases

(2013) Jing Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

(2013) Sarah Geisler et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

NONCODEv4: exploring the world of long non-coding RNA genes

(2013) Chaoyong Xie et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor

(2012) Zilian Cui et al.   UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONS

Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges

(2012) Natasha Andressa Nogueira Jorge et al.   Frontiers in Genetics

Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

RNA–protein interactions in human health and disease

(2011) Ahmad M. Khalil et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Correlation and quantitation of microRNA aberrant expression in tissues and sera from patients with breast tumor

(2010) Fengjun Wang et al.   GYNECOLOGIC ONCOLOGY

Accurate and diverse recommendations via eliminating redundant correlations

(2009) Tao Zhou et al.   NEW JOURNAL OF PHYSICS

Effects of high-order correlations on personalized recommendations for bipartite networks

(2009) Jian-Guo Liu et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase

(2008) Mohammad Ali Faghihi et al.   NATURE MEDICINE

GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer

(2008) M Mourtada-Maarabouni et al.   ONCOGENE