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(2021) Zheng Zhang et al.   Ecology and Evolution

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(2021) Surendra Vikram et al.   PeerJ

Faecal microbiota and antibiotic resistance genes in migratory waterbirds with contrasting habitat use

(2021) Dayana Jarma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characterization of the gut microbiome of black-necked cranes (Grus nigricollis) in six wintering areas in China

(2020) Wen Wang et al.   ARCHIVES OF MICROBIOLOGY

Lactobacillus and Pediococcus ameliorate progression of non-alcoholic fatty liver disease through modulation of the gut microbiome

(2020) Na Young Lee et al.   Gut Microbes

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(2020) Bo Zeng et al.   MICROBIOLOGICAL RESEARCH

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Comparing the intestinal bacterial communies of sympatric wintering Hooded Crane (Grus monacha) and Domestic Goose (Anser anser domesticus)

(2020) Rong Fu et al.   Avian Research

Lactobacillus exopolysaccharides: New perspectives on engineering strategies, physiochemical functions, and immunomodulatory effects on host health

(2020) Muhammad Shahid Riaz Rajoka et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Short communication: Variability in fermentation end-products and methanogen communities in different rumen sites of dairy cows

(2018) ZhiYuan Ma et al.   JOURNAL OF DAIRY SCIENCE

Characterization of the Gut Microbiota in Six Geographical Populations of Chinese Rhesus Macaques (Macaca mulatta), Implying an Adaptation to High-Altitude Environment

(2018) Junsong Zhao et al.   MICROBIAL ECOLOGY

Habitat use, preference, and utilization distribution of two crane species (Genus: Grus) in Huize National Nature Reserve, Yunnan–Guizhou Plateau, China

(2018) Dejun Kong et al.   PeerJ

Habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved

(2018) Yueni Wu et al.   Scientific Reports

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch

(2018) Alice J. Michel et al.   Microbiome

Evaluating the core microbiota in complex communities: A systematic investigation

(2017) Carmen Astudillo-García et al.   ENVIRONMENTAL MICROBIOLOGY

Enterococcus hirae and Barnesiella intestinihominis Facilitate Cyclophosphamide-Induced Therapeutic Immunomodulatory Effects

(2016) Romain Daillère et al.   IMMUNITY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Microbial Changes during Pregnancy, Birth, and Infancy

(2016) Meital Nuriel-Ohayon et al.   Frontiers in Microbiology

Cecal microbiota of Tibetan Chickens from five geographic regions were determined by 16S rRNA sequencing

(2016) Xueyan Zhou et al.   MicrobiologyOpen

Winter diet and food selection of the Black-necked CraneGrus nigricollisin Dashanbao, Yunnan, China

(2016) Hao Yan Dong et al.   PeerJ

Responsiveness of soil nitrogen fractions and bacterial communities to afforestation in the Loess Hilly Region (LHR) of China

(2016) Chengjie Ren et al.   Scientific Reports

Effects of captivity and artificial breeding on microbiota in feces of the red-crowned crane (Grus japonensis)

(2016) Yuwei Xie et al.   Scientific Reports

Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing

(2015) Long Li et al.   Scientific Reports

Insights into the Role of Erysipelotrichaceae in the Human Host

(2015) Nadeem O. Kaakoush   Frontiers in Cellular and Infection Microbiology

Exploring the avian gut microbiota: current trends and future directions

(2015) David W. Waite et al.   Frontiers in Microbiology

High-grain feeding alters caecal bacterial microbiota composition and fermentation and results in caecal mucosal injury in goats

(2014) Junhua Liu et al.   BRITISH JOURNAL OF NUTRITION

The role of diet on intestinal microbiota metabolism: downstream impacts on host immune function and health, and therapeutic implications

(2014) Jason R. Goldsmith et al.   JOURNAL OF GASTROENTEROLOGY

A Perspective on the Complexity of Dietary Fiber Structures and Their Potential Effect on the Gut Microbiota

(2014) Bruce R. Hamaker et al.   JOURNAL OF MOLECULAR BIOLOGY

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

(2014) Elie Jami et al.   PLoS One

Plateau Wetlands, an Indispensible Habitat for the Black-Necked Crane (Grus nigricollis) - A Review

(2014) Hongtao Song et al.   WETLANDS

Characterizing the avian gut microbiota: membership, driving influences, and potential function

(2014) David W. Waite et al.   Frontiers in Microbiology

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Diversity and function of the avian gut microbiota

(2012) Kevin D. Kohl   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

PP90 IMPACT OF DIET IN SHAPING GUT MICROBIOTA REVEALED BY A COMPARATIVE STUDY IN CHILDREN FROM EUROPE AND RURAL AFRICA

(2011) M. Di Paola et al.   DIGESTIVE AND LIVER DISEASE

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models

(2010) E F Murphy et al.   GUT

Migration routes and stopover sites of Black-necked Cranes determined by satellite tracking

(2009) Fawen Qian et al.   JOURNAL OF FIELD ORNITHOLOGY