The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

(2018) M. Lisandra Zepeda Mendoza et al.   Nature Ecology & Evolution

Host-specific associations affect the microbiome of Philornis downsi , an introduced parasite to the Galápagos Islands

(2017) Michael Ben-Yosef et al.   MOLECULAR ECOLOGY

Codiversification of gastrointestinal microbiota and phylogeny in passerines is not explained by ecological divergence

(2017) Lucie Kropáčková et al.   MOLECULAR ECOLOGY

Rapid hybrid speciation in Darwin’s finches

(2017) Sangeet Lamichhaney et al.   SCIENCE

Evolutionary Biology Needs Wild Microbiomes

(2017) Sarah M. Hird   Frontiers in Microbiology

Morphological and genetic factors shape the microbiome of a seabird species (Oceanodroma leucorhoa) more than environmental and social factors

(2017) Douglas S. Pearce et al.   Microbiome

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

(2016) Timothy J. Colston et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Reappraisal of the Trophic Ecology of One of the World’s Most Threatened Spheniscids, the African Penguin

(2016) Maëlle Connan et al.   PLoS One

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

(2015) Laura Baldo et al.   PLoS One

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

(2015) Jon G. Sanders et al.   Nature Communications

Exploring the avian gut microbiota: current trends and future directions

(2015) David W. Waite et al.   Frontiers in Microbiology

Phyllostomid bat microbiome composition is associated to host phylogeny and feeding strategies

(2015) Mario Carrillo-Araujo et al.   Frontiers in Microbiology

Intestinal Microbiota and Species Diversity ofCampylobacterandHelicobacterspp. in Migrating Shorebirds in Delaware Bay

(2014) Hodon Ryu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiota of the chicken gastrointestinal tract: influence on health, productivity and disease

(2014) Dragana Stanley et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

THE EVOLUTIONARY HISTORY OF DARWIN'S FINCHES: SPECIATION, GENE FLOW, AND INTROGRESSION IN A FRAGMENTED LANDSCAPE

(2014) Heather L. Farrington et al.   EVOLUTION

The chicken gastrointestinal microbiome

(2014) Brian B. Oakley et al.   FEMS MICROBIOLOGY LETTERS

Darwin's finches and their diet niches: the sympatric coexistence of imperfect generalists

(2014) L. F. De León et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The microbiome of New World vultures

(2014) Michael Roggenbuck et al.   Nature Communications

Characterizing the avian gut microbiota: membership, driving influences, and potential function

(2014) David W. Waite et al.   Frontiers in Microbiology

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)

(2014) Sarah M. Hird et al.   PeerJ

Convergence of gut microbiomes in myrmecophagous mammals

(2013) Frédéric Delsuc et al.   MOLECULAR ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The alligator gut microbiome and implications for archosaur symbioses

(2013) Sarah W. Keenan et al.   Scientific Reports

Interspecific variations in the gastrointestinal microbiota in penguins

(2013) Meagan L. Dewar et al.   MicrobiologyOpen

Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores

(2012) Kevin D. Kohl et al.   ECOLOGY LETTERS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Age, body mass and environmental variation shape the foraging ontogeny of Galapagos sea lions

(2012) JWE Jeglinski et al.   MARINE ECOLOGY PROGRESS SERIES

Ecological drift and local exposures drive enteric bacterial community differences within species of Galápagos iguanas

(2012) EMILY W. LANKAU et al.   MOLECULAR ECOLOGY

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing

(2011) Pei-Ying Hong et al.   ISME Journal

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial distributions of carbon, nitrogen and sulfur isotope ratios in human hair across the central United States

(2011) Luciano O. Valenzuela et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010.

(2011) Jack A. Gilbert et al.   Standards in Genomic Sciences

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Size-based variation in intertissue comparisons of stable carbon and nitrogen isotopic signatures of bull sharks (Carcharhinus leucas) and tiger sharks (Galeocerdo cuvier)

(2010) Philip Matich et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Diversity and temporal stability of bacterial communities in a model passerine bird, the zebra finch

(2010) CLARE McW. H. BENSKIN et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Campylobacter volucris sp. nov., isolated from black-headed gulls (Larus ridibundus)

(2009) L. Debruyne et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Stable carbon and nitrogen isotope discrimination in soft tissues of the leatherback turtle (Dermochelys coriacea): Insights for trophic studies of marine turtles

(2009) Jeffrey A. Seminoff et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE