Rapid Targeted Quantitation of Protein Overexpression with Direct Infusion Shotgun Proteome Analysis (DISPA-PRM)

Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4

(2020) Wai Kit Ong et al.   PLoS Computational Biology

Quantitative shotgun proteome analysis by direct infusion

(2020) Jesse G. Meyer et al.   NATURE METHODS

Systems-Level Analysis of Oxygen Exposure in Zymomonas mobilis: Implications for Isoprenoid Production

(2019) Julia I. Martien et al.   mSystems

Systems Metabolic Engineering Strategies: Integrating Systems and Synthetic Biology with Metabolic Engineering

(2019) Kyeong Rok Choi et al.   TRENDS IN BIOTECHNOLOGY

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning

(2019) Siegfried Gessulat et al.   NATURE METHODS

Advances and prospects in metabolic engineering of Zymomonas mobilis

(2018) Xia Wang et al.   METABOLIC ENGINEERING

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

(2017) Lindsay K. Pino et al.   MASS SPECTROMETRY REVIEWS

Parallel reaction monitoring using quadrupole-Orbitrap mass spectrometer: Principle and applications

(2016) Adele Bourmaud et al.   PROTEOMICS

Multiplexed peptide analysis using data-independent acquisition and Skyline

(2015) Jarrett D Egertson et al.   Nature Protocols

Metabolic engineering of yeast for production of fuels and chemicals

(2013) Jens Nielsen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Sources of Technical Variability in Quantitative LC–MS Proteomics: Human Brain Tissue Sample Analysis

(2013) Paul D. Piehowski et al.   JOURNAL OF PROTEOME RESEARCH

Western BlotsversusSelected Reaction Monitoring Assays: Time to Turn the Tables?

(2013) Ruedi Aebersold et al.   MOLECULAR & CELLULAR PROTEOMICS

Evaluation of Direct Infusion-Multiple Reaction Monitoring Mass Spectrometry for Quantification of Heat Shock Proteins

(2012) Yun Xiang et al.   ANALYTICAL CHEMISTRY

Synthetic Pathway for Production of Five-Carbon Alcohols from Isopentenyl Diphosphate

(2012) Howard H. Chou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics

(2012) Amelia C. Peterson et al.   MOLECULAR & CELLULAR PROTEOMICS

Spectrum-to-Spectrum Searching Using a Proteome-wide Spectral Library

(2011) Chia-Yu Yen et al.   MOLECULAR & CELLULAR PROTEOMICS

Multi-Segment Direct Inject nano-ESI-LTQ-FT-ICR-MS/MS For Protein Identification

(2011) Jing Chen et al.   Proteome Science

Advanced biofuel production in microbes

(2010) Pamela P. Peralta-Yahya et al.   Biotechnology Journal

Peptide Identification from Mixture Tandem Mass Spectra

(2010) Jian Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry

(2009) David L. Tabb et al.   JOURNAL OF PROTEOME RESEARCH

Metabolic engineering for advanced biofuels production from Escherichia coli

(2008) Shota Atsumi et al.   CURRENT OPINION IN BIOTECHNOLOGY

Development of a high-throughput IMS–IMS–MS approach for analyzing mixtures of biomolecules

(2008) Ruwan T. Kurulugama et al.   Journal of Proteomics